Jobin Varkey
Research professor at University of Southern California
Research Interests
Publications
Membrane Curvature Induction and Tubulation Are Common Features of Synucleins and Apolipoproteins
Journal of Biological Chemistry / Oct 01, 2010
Varkey, J., Isas, J. M., Mizuno, N., Jensen, M. B., Bhatia, V. K., Jao, C. C., Petrlova, J., Voss, J. C., Stamou, D. G., Steven, A. C., & Langen, R. (2010). Membrane Curvature Induction and Tubulation Are Common Features of Synucleins and Apolipoproteins. Journal of Biological Chemistry, 285(42), 32486–32493. https://doi.org/10.1074/jbc.m110.139576
Pericyte degeneration causes white matter dysfunction in the mouse central nervous system
Nature Medicine / Feb 05, 2018
Montagne, A., Nikolakopoulou, A. M., Zhao, Z., Sagare, A. P., Si, G., Lazic, D., Barnes, S. R., Daianu, M., Ramanathan, A., Go, A., Lawson, E. J., Wang, Y., Mack, W. J., Thompson, P. M., Schneider, J. A., Varkey, J., Langen, R., Mullins, E., Jacobs, R. E., & Zlokovic, B. V. (2018). Pericyte degeneration causes white matter dysfunction in the mouse central nervous system. Nature Medicine, 24(3), 326–337. https://doi.org/10.1038/nm.4482
Remodeling of Lipid Vesicles into Cylindrical Micelles by α-Synuclein in an Extended α-Helical Conformation
Journal of Biological Chemistry / Aug 01, 2012
Mizuno, N., Varkey, J., Kegulian, N. C., Hegde, B. G., Cheng, N., Langen, R., & Steven, A. C. (2012). Remodeling of Lipid Vesicles into Cylindrical Micelles by α-Synuclein in an Extended α-Helical Conformation. Journal of Biological Chemistry, 287(35), 29301–29311. https://doi.org/10.1074/jbc.m112.365817
Semisynthetic, Site-Specific Ubiquitin Modification of α-Synuclein Reveals Differential Effects on Aggregation
Journal of the American Chemical Society / Mar 14, 2012
Meier, F., Abeywardana, T., Dhall, A., Marotta, N. P., Varkey, J., Langen, R., Chatterjee, C., & Pratt, M. R. (2012). Semisynthetic, Site-Specific Ubiquitin Modification of α-Synuclein Reveals Differential Effects on Aggregation. Journal of the American Chemical Society, 134(12), 5468–5471. https://doi.org/10.1021/ja300094r
Antibacterial Activity of Human Neutrophil Defensin HNP-1 Analogs without Cysteines
Antimicrobial Agents and Chemotherapy / Nov 01, 2005
Varkey, J., & Nagaraj, R. (2005). Antibacterial Activity of Human Neutrophil Defensin HNP-1 Analogs without Cysteines. Antimicrobial Agents and Chemotherapy, 49(11), 4561–4566. https://doi.org/10.1128/aac.49.11.4561-4566.2005
Rational design of potent domain antibody inhibitors of amyloid fibril assembly
Proceedings of the National Academy of Sciences / Nov 15, 2012
Ladiwala, A. R. A., Bhattacharya, M., Perchiacca, J. M., Cao, P., Raleigh, D. P., Abedini, A., Schmidt, A. M., Varkey, J., Langen, R., & Tessier, P. M. (2012). Rational design of potent domain antibody inhibitors of amyloid fibril assembly. Proceedings of the National Academy of Sciences, 109(49), 19965–19970. https://doi.org/10.1073/pnas.1208797109
Nonaggregated α-Synuclein Influences SNARE-Dependent Vesicle Docking via Membrane Binding
Biochemistry / Jun 13, 2014
Lai, Y., Kim, S., Varkey, J., Lou, X., Song, J.-K., Diao, J., Langen, R., & Shin, Y.-K. (2014). Nonaggregated α-Synuclein Influences SNARE-Dependent Vesicle Docking via Membrane Binding. Biochemistry, 53(24), 3889–3896. https://doi.org/10.1021/bi5002536
Hydration dynamics as an intrinsic ruler for refining protein structure at lipid membrane interfaces
Proceedings of the National Academy of Sciences / Sep 30, 2013
Cheng, C.-Y., Varkey, J., Ambroso, M. R., Langen, R., & Han, S. (2013). Hydration dynamics as an intrinsic ruler for refining protein structure at lipid membrane interfaces. Proceedings of the National Academy of Sciences, 110(42), 16838–16843. https://doi.org/10.1073/pnas.1307678110
α-Synuclein Oligomers with Broken Helical Conformation Form Lipoprotein Nanoparticles
Journal of Biological Chemistry / Jun 01, 2013
Varkey, J., Mizuno, N., Hegde, B. G., Cheng, N., Steven, A. C., & Langen, R. (2013). α-Synuclein Oligomers with Broken Helical Conformation Form Lipoprotein Nanoparticles. Journal of Biological Chemistry, 288(24), 17620–17630. https://doi.org/10.1074/jbc.m113.476697
α-Synuclein Amyloid Fibrils with Two Entwined, Asymmetrically Associated Protofibrils
Journal of Biological Chemistry / Jan 01, 2016
Dearborn, A. D., Wall, J. S., Cheng, N., Heymann, J. B., Kajava, A. V., Varkey, J., Langen, R., & Steven, A. C. (2016). α-Synuclein Amyloid Fibrils with Two Entwined, Asymmetrically Associated Protofibrils. Journal of Biological Chemistry, 291(5), 2310–2318. https://doi.org/10.1074/jbc.m115.698787
Gene co-expression network analysis for identifying genetic markers in Parkinson's disease - a three-way comparative approach
Genomics / Jul 01, 2019
George, G., Singh, S., Lokappa, S. B., & Varkey, J. (2019). Gene co-expression network analysis for identifying genetic markers in Parkinson’s disease - a three-way comparative approach. Genomics, 111(4), 819–830. https://doi.org/10.1016/j.ygeno.2018.05.005
Membranes as modulators of amyloid protein misfolding and target of toxicity
Biochimica et Biophysica Acta (BBA) - Biomembranes / Sep 01, 2018
Rawat, A., Langen, R., & Varkey, J. (2018). Membranes as modulators of amyloid protein misfolding and target of toxicity. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1860(9), 1863–1875. https://doi.org/10.1016/j.bbamem.2018.04.011
E46K-like α-synuclein mutants increase lipid interactions and disrupt membrane selectivity
Journal of Biological Chemistry / Jun 01, 2019
Rovere, M., Powers, A. E., Jiang, H., Pitino, J. C., Fonseca-Ornelas, L., Patel, D. S., Achille, A., Langen, R., Varkey, J., & Bartels, T. (2019). E46K-like α-synuclein mutants increase lipid interactions and disrupt membrane selectivity. Journal of Biological Chemistry, 294(25), 9799–9812. https://doi.org/10.1074/jbc.ra118.006551
Antibacterial activity of linear peptides spanning the carboxy-terminal β-sheet domain of arthropod defensins
Peptides / Nov 01, 2006
Varkey, J., Singh, S., & Nagaraj, R. (2006). Antibacterial activity of linear peptides spanning the carboxy-terminal β-sheet domain of arthropod defensins. Peptides, 27(11), 2614–2623. https://doi.org/10.1016/j.peptides.2006.06.010
Early Sodium Dodecyl Sulfate Induced Collapse of α-Synuclein Correlates with Its Amyloid Formation
ACS Chemical Neuroscience / Nov 17, 2014
Basak, S., Prasad, G. V. R. K., Varkey, J., & Chattopadhyay, K. (2014). Early Sodium Dodecyl Sulfate Induced Collapse of α-Synuclein Correlates with Its Amyloid Formation. ACS Chemical Neuroscience, 6(2), 239–246. https://doi.org/10.1021/cn500168x
Construction of Parkinson's disease marker-based weighted protein-protein interaction network for prioritization of co-expressed genes
Gene / May 01, 2019
George, G., Valiya Parambath, S., Lokappa, S. B., & Varkey, J. (2019). Construction of Parkinson’s disease marker-based weighted protein-protein interaction network for prioritization of co-expressed genes. Gene, 697, 67–77. https://doi.org/10.1016/j.gene.2019.02.026
Membrane remodeling by amyloidogenic and non-amyloidogenic proteins studied by EPR
Journal of Magnetic Resonance / Jul 01, 2017
Varkey, J., & Langen, R. (2017). Membrane remodeling by amyloidogenic and non-amyloidogenic proteins studied by EPR. Journal of Magnetic Resonance, 280, 127–139. https://doi.org/10.1016/j.jmr.2017.02.014
An Amphipathic Alpha-Helix Domain from Poliovirus 2C Protein Tubulate Lipid Vesicles
Viruses / Dec 18, 2020
Varkey, J., Zhang, J., Kim, J., George, G., He, G., Belov, G., Langen, R., & Wang, X. (2020). An Amphipathic Alpha-Helix Domain from Poliovirus 2C Protein Tubulate Lipid Vesicles. Viruses, 12(12), 1466. https://doi.org/10.3390/v12121466
Structural Model of the Proline-Rich Domain of Huntingtin Exon-1 Fibrils
Biophysical Journal / Nov 01, 2020
Falk, A. S., Bravo-Arredondo, J. M., Varkey, J., Pacheco, S., Langen, R., & Siemer, A. B. (2020). Structural Model of the Proline-Rich Domain of Huntingtin Exon-1 Fibrils. Biophysical Journal, 119(10), 2019–2028. https://doi.org/10.1016/j.bpj.2020.10.010
Molecular basis of Q-length selectivity for the MW1 antibody–huntingtin interaction
Journal of Biological Chemistry / Apr 01, 2023
Bravo-Arredondo, J. M., Venkataraman, R., Varkey, J., Isas, J. M., Situ, A. J., Xu, H., Chen, J., Ulmer, T. S., & Langen, R. (2023). Molecular basis of Q-length selectivity for the MW1 antibody–huntingtin interaction. Journal of Biological Chemistry, 299(4), 104616. https://doi.org/10.1016/j.jbc.2023.104616
α-Synuclein Amyloid Fibrils Formed of Two Protofibrils
Microscopy and Microanalysis / Aug 01, 2015
Dearborn, A. D., Cheng, N., Bernard Heymann, J., Wall, J. S., Varkey, J., Langen, R., & Steven, A. C. (2015). α-Synuclein Amyloid Fibrils Formed of Two Protofibrils. Microscopy and Microanalysis, 21(S3), 1285–1286. https://doi.org/10.1017/s1431927615007217
α Synuclein Amyloid Fibrils With Two Entwined Protofibrils Each With One Subunit Per 4.7 Å Axial Rise
Microscopy and Microanalysis / Aug 01, 2013
Dearborn, A. D., Cheng, N., Heymann, J. B., Varkey, J., Langen, R., & Steven, A. C. (2013). α Synuclein Amyloid Fibrils With Two Entwined Protofibrils Each With One Subunit Per 4.7 Å Axial Rise. Microscopy and Microanalysis, 19(S2), 82–83. https://doi.org/10.1017/s1431927613002407
Hydration Dynamics as a Molecular Ruler for Refining Protein Structure at Lipid Membrane Interfaces
Biophysical Journal / Jan 01, 2013
Cheng, C.-Y., Varkey, J., Langen, R., & Han, S. (2013). Hydration Dynamics as a Molecular Ruler for Refining Protein Structure at Lipid Membrane Interfaces. Biophysical Journal, 104(2), 221a. https://doi.org/10.1016/j.bpj.2012.11.1246
Defensins: antimicrobial peptides of innate immunity
Nature Reviews Immunology / Sep 01, 2003
Ganz, T. (2003). Defensins: antimicrobial peptides of innate immunity. Nature Reviews Immunology, 3(9), 710–720. https://doi.org/10.1038/nri1180
Education
Ph.D., Biochemistry / May, 2008
Experience
University of Southern California, Los Angeles
Karunya University
Centre for Biotechnology
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