Niko Popitsch

Senior Bioinformatician, University of Vienna

Research Interests

Bioinformatics
Genetics (clinical)
Genetics
Molecular Biology
Cell Biology
Cancer Research
Oncology
Computer Networks and Communications
Software
Molecular Medicine
Biotechnology
Developmental Biology
Statistics and Probability
Modeling and Simulation

Publications

Faculty Opinions recommendation of Factors influencing success of clinical genome sequencing across a broad spectrum of disorders.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature / May 30, 2015

Robinson, P. (2015). Faculty Opinions recommendation of Factors influencing success of clinical genome sequencing across a broad spectrum of disorders. Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature. https://doi.org/10.3410/f.725503562.793507065

The complete costs of genome sequencing: a microcosting study in cancer and rare diseases from a single center in the United Kingdom

Genetics in Medicine / Jan 01, 2020

Schwarze, K., Buchanan, J., Fermont, J. M., Dreau, H., Tilley, M. W., Taylor, J. M., Antoniou, P., Knight, S. J. L., Camps, C., Pentony, M. M., Kvikstad, E. M., Harris, S., Popitsch, N., Pagnamenta, A. T., Schuh, A., Taylor, J. C., & Wordsworth, S. (2020). The complete costs of genome sequencing: a microcosting study in cancer and rare diseases from a single center in the United Kingdom. Genetics in Medicine, 22(1), 85–94. https://doi.org/10.1038/s41436-019-0618-7

Sequencing of human genomes with nanopore technology

Nature Communications / Apr 23, 2019

Bowden, R., Davies, R. W., Heger, A., Pagnamenta, A. T., de Cesare, M., Oikkonen, L. E., Parkes, D., Freeman, C., Dhalla, F., Patel, S. Y., Popitsch, N., Ip, C. L. C., Roberts, H. E., Salatino, S., Lockstone, H., Lunter, G., Taylor, J. C., Buck, D., Simpson, M. A., & Donnelly, P. (2019). Sequencing of human genomes with nanopore technology. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-09637-5

Clinical whole-genome sequencing from routine formalin-fixed, paraffin-embedded specimens: pilot study for the 100,000 Genomes Project

Genetics in Medicine / Oct 01, 2018

Robbe, P., Popitsch, N., Knight, S. J. L., Antoniou, P., Becq, J., He, M., Kanapin, A., Samsonova, A., Vavoulis, D. V., Ross, M. T., Kingsbury, Z., Cabes, M., Ramos, S. D. C., Page, S., Dreau, H., Ridout, K., Jones, L. J., Tuff-Lacey, A., Henderson, S., … Schuh, A. (2018). Clinical whole-genome sequencing from routine formalin-fixed, paraffin-embedded specimens: pilot study for the 100,000 Genomes Project. Genetics in Medicine, 20(10), 1196–1205. https://doi.org/10.1038/gim.2017.241

The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation

PLOS Pathogens / Sep 15, 2015

Drecktrah, D., Lybecker, M., Popitsch, N., Rescheneder, P., Hall, L. S., & Samuels, D. S. (2015). The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation. PLOS Pathogens, 11(9), e1005160. https://doi.org/10.1371/journal.ppat.1005160

Revisiting the coding potential of theE. coligenome through Hfq co-immunoprecipitation

RNA Biology / May 01, 2014

Bilusic, I., Popitsch, N., Rescheneder, P., Schroeder, R., & Lybecker, M. (2014). Revisiting the coding potential of theE. coligenome through Hfq co-immunoprecipitation. RNA Biology, 11(5), 641–654. https://doi.org/10.4161/rna.29299

Mutations inPIGY: expanding the phenotype of inherited glycosylphosphatidylinositol deficiencies

Human Molecular Genetics / Aug 20, 2015

Ilkovski, B., Pagnamenta, A. T., O’Grady, G. L., Kinoshita, T., Howard, M. F., Lek, M., Thomas, B., Turner, A., Christodoulou, J., Sillence, D., Knight, S. J. L., Popitsch, N., Keays, D. A., Anzilotti, C., Goriely, A., Waddell, L. B., Brilot, F., North, K. N., Kanzawa, N., … Clarke, N. F. (2015). Mutations inPIGY: expanding the phenotype of inherited glycosylphosphatidylinositol deficiencies. Human Molecular Genetics, 24(21), 6146–6159. https://doi.org/10.1093/hmg/ddv331

Analysis of exome data for 4293 trios suggests GPI-anchor biogenesis defects are a rare cause of developmental disorders

European Journal of Human Genetics / Mar 22, 2017

Pagnamenta, A. T., Murakami, Y., Taylor, J. M., Anzilotti, C., Howard, M. F., Miller, V., Johnson, D. S., Tadros, S., Mansour, S., Temple, I. K., Firth, R., Rosser, E., Harrison, R. E., Kerr, B., Popitsch, N., Kinoshita, T., Taylor, J. C., & Kini, U. (2017). Analysis of exome data for 4293 trios suggests GPI-anchor biogenesis defects are a rare cause of developmental disorders. European Journal of Human Genetics, 25(6), 669–679. https://doi.org/10.1038/ejhg.2017.32

Novel Clinically Relevant Genes in Gastrointestinal Stromal Tumors Identified by Exome Sequencing

Clinical Cancer Research / Oct 01, 2013

Schoppmann, S. F., Vinatzer, U., Popitsch, N., Mittlböck, M., Liebmann-Reindl, S., Jomrich, G., Streubel, B., & Birner, P. (2013). Novel Clinically Relevant Genes in Gastrointestinal Stromal Tumors Identified by Exome Sequencing. Clinical Cancer Research, 19(19), 5329–5339. https://doi.org/10.1158/1078-0432.ccr-12-3863

NGC: lossless and lossy compression of aligned high-throughput sequencing data

Nucleic Acids Research / Oct 12, 2012

Popitsch, N., & von Haeseler, A. (2012). NGC: lossless and lossy compression of aligned high-throughput sequencing data. Nucleic Acids Research, 41(1), e27–e27. https://doi.org/10.1093/nar/gks939

DSNotify

Proceedings of the 19th international conference on World wide web / Apr 26, 2010

Popitsch, N. P., & Haslhofer, B. (2010). DSNotify. Proceedings of the 19th International Conference on World Wide Web. https://doi.org/10.1145/1772690.1772768

In vivoexpression technology and 5′ end mapping of theBorrelia burgdorferitranscriptome identify novel RNAs expressed during mammalian infection

Nucleic Acids Research / Dec 01, 2016

Adams, P. P., Flores Avile, C., Popitsch, N., Bilusic, I., Schroeder, R., Lybecker, M., & Jewett, M. W. (2016). In vivoexpression technology and 5′ end mapping of theBorrelia burgdorferitranscriptome identify novel RNAs expressed during mammalian infection. Nucleic Acids Research, 45(2), 775–792. https://doi.org/10.1093/nar/gkw1180

DSNotify – A solution for event detection and link maintenance in dynamic datasets

Journal of Web Semantics / Sep 01, 2011

Popitsch, N., & Haslhofer, B. (2011). DSNotify – A solution for event detection and link maintenance in dynamic datasets. Journal of Web Semantics, 9(3), 266–283. https://doi.org/10.1016/j.websem.2011.05.002

Germline recessive mutations in PI4KA are associated with perisylvian polymicrogyria, cerebellar hypoplasia and arthrogryposis

Human Molecular Genetics / Apr 08, 2015

Pagnamenta, A. T., Howard, M. F., Wisniewski, E., Popitsch, N., Knight, S. J. L., Keays, D. A., Quaghebeur, G., Cox, H., Cox, P., Balla, T., Taylor, J. C., & Kini, U. (2015). Germline recessive mutations in PI4KA are associated with perisylvian polymicrogyria, cerebellar hypoplasia and arthrogryposis. Human Molecular Genetics, 24(13), 3732–3741. https://doi.org/10.1093/hmg/ddv117

Impaired plasticity of macrophages in X-linked adrenoleukodystrophy

Brain / May 30, 2018

Weinhofer, I., Zierfuss, B., Hametner, S., Wagner, M., Popitsch, N., Machacek, C., Bartolini, B., Zlabinger, G., Ohradanova-Repic, A., Stockinger, H., Köhler, W., Höftberger, R., Regelsberger, G., Forss-Petter, S., Lassmann, H., & Berger, J. (2018). Impaired plasticity of macrophages in X-linked adrenoleukodystrophy. Brain, 141(8), 2329–2342. https://doi.org/10.1093/brain/awy127

Assessment of Pre-Analytical Sample Handling Conditions for Comprehensive Liquid Biopsy Analysis

The Journal of Molecular Diagnostics / Aug 01, 2020

Gerber, T., Taschner-Mandl, S., Saloberger-Sindhöringer, L., Popitsch, N., Heitzer, E., Witt, V., Geyeregger, R., Hutter, C., Schwentner, R., Ambros, I. M., & Ambros, P. F. (2020). Assessment of Pre-Analytical Sample Handling Conditions for Comprehensive Liquid Biopsy Analysis. The Journal of Molecular Diagnostics, 22(8), 1070–1086. https://doi.org/10.1016/j.jmoldx.2020.05.006

Genomic and transcriptomic correlates of Richter transformation in chronic lymphocytic leukemia

Blood / May 20, 2021

Klintman, J., Appleby, N., Stamatopoulos, B., Ridout, K., Eyre, T. A., Robbe, P., Pascua, L. L., Knight, S. J. L., Dreau, H., Cabes, M., Popitsch, N., Ehinger, M., Martín-Subero, J. I., Campo, E., Månsson, R., Rossi, D., Taylor, J. C., Vavoulis, D. V., & Schuh, A. (2021). Genomic and transcriptomic correlates of Richter transformation in chronic lymphocytic leukemia. Blood, 137(20), 2800–2816. https://doi.org/10.1182/blood.2020005650

Temperature-dependent sRNA transcriptome of the Lyme disease spirochete

BMC Genomics / Jan 05, 2017

Popitsch, N., Bilusic, I., Rescheneder, P., Schroeder, R., & Lybecker, M. (2017). Temperature-dependent sRNA transcriptome of the Lyme disease spirochete. BMC Genomics, 18(1). https://doi.org/10.1186/s12864-016-3398-3

Natural RNA Polymerase Aptamers Regulate Transcription in E. coli

Molecular Cell / Jul 01, 2017

Sedlyarova, N., Rescheneder, P., Magán, A., Popitsch, N., Rziha, N., Bilusic, I., Epshtein, V., Zimmermann, B., Lybecker, M., Sedlyarov, V., Schroeder, R., & Nudler, E. (2017). Natural RNA Polymerase Aptamers Regulate Transcription in E. coli. Molecular Cell, 67(1), 30-43.e6. https://doi.org/10.1016/j.molcel.2017.05.025

DSNotify - Detecting and Fixing Broken Links in Linked Data Sets

2009 20th International Workshop on Database and Expert Systems Application / Jan 01, 2009

Haslhofer, B., & Popitsch, N. (2009). DSNotify - Detecting and Fixing Broken Links in Linked Data Sets. 2009 20th International Workshop on Database and Expert Systems Application. https://doi.org/10.1109/dexa.2009.13

Spectrum of gene mutations detected by next generation exome sequencing in brain metastases of lung adenocarcinoma

European Journal of Cancer / Sep 01, 2015

Preusser, M., Berghoff, A. S., Koller, R., Zielinski, C. C., Hainfellner, J. A., Liebmann-Reindl, S., Popitsch, N., Geier, C. B., Streubel, B., & Birner, P. (2015). Spectrum of gene mutations detected by next generation exome sequencing in brain metastases of lung adenocarcinoma. European Journal of Cancer, 51(13), 1803–1811. https://doi.org/10.1016/j.ejca.2015.06.107

CD371 cell surface expression: a unique feature of DUX4-rearranged acute lymphoblastic leukemia

Haematologica / Jan 31, 2019

Schinnerl, D., Mejstrikova, E., Schumich, A., Zaliova, M., Fortschegger, K., Nebral, K., Attarbaschi, A., Fiser, K., Kauer, M. O., Popitsch, N., Haslinger, S., Inthal, A., Buldini, B., Basso, G., Bourquin, J.-P., Gaipa, G., Brüggemann, M., Feuerstein, T., Maurer-Granofszky, M., … Strehl, S. (2019). CD371 cell surface expression: a unique feature of DUX4-rearranged acute lymphoblastic leukemia. Haematologica, 104(8), e352–e355. https://doi.org/10.3324/haematol.2018.214353

Next-Generation Sequencing-based genomic profiling of brain metastases of primary ovarian cancer identifies high number of BRCA-mutations

Journal of Neuro-Oncology / May 11, 2017

Balendran, S., Liebmann-Reindl, S., Berghoff, A. S., Reischer, T., Popitsch, N., Geier, C. B., Kenner, L., Birner, P., Streubel, B., & Preusser, M. (2017). Next-Generation Sequencing-based genomic profiling of brain metastases of primary ovarian cancer identifies high number of BRCA-mutations. Journal of Neuro-Oncology, 133(3), 469–476. https://doi.org/10.1007/s11060-017-2459-z

Hijacking of transcriptional condensates by endogenous retroviruses

Nature Genetics / Jul 21, 2022

Asimi, V., Sampath Kumar, A., Niskanen, H., Riemenschneider, C., Hetzel, S., Naderi, J., Fasching, N., Popitsch, N., Du, M., Kretzmer, H., Smith, Z. D., Weigert, R., Walther, M., Mamde, S., Meierhofer, D., Wittler, L., Buschow, R., Timmermann, B., Cisse, I. I., … Hnisz, D. (2022). Hijacking of transcriptional condensates by endogenous retroviruses. Nature Genetics, 54(8), 1238–1247. https://doi.org/10.1038/s41588-022-01132-w

Targeted Next-Generation Sequencing of Plasma DNA from Cancer Patients: Factors Influencing Consistency with Tumour DNA and Prospective Investigation of Its Utility for Diagnosis

PLOS ONE / Sep 14, 2016

Kaisaki, P. J., Cutts, A., Popitsch, N., Camps, C., Pentony, M. M., Wilson, G., Page, S., Kaur, K., Vavoulis, D., Henderson, S., Gupta, A., Middleton, M. R., Karydis, I., Talbot, D. C., Schuh, A., & Taylor, J. C. (2016). Targeted Next-Generation Sequencing of Plasma DNA from Cancer Patients: Factors Influencing Consistency with Tumour DNA and Prospective Investigation of Its Utility for Diagnosis. PLOS ONE, 11(9), e0162809. https://doi.org/10.1371/journal.pone.0162809

Interweaving OAI-PMH data sources with the linked data cloud

International Journal of Metadata, Semantics and Ontologies / Jan 01, 2010

Haslhofer, B., & Schandl, B. (2010). Interweaving OAI-PMH data sources with the linked data cloud. International Journal of Metadata, Semantics and Ontologies, 5(1), 17. https://doi.org/10.1504/ijmso.2010.032648

A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals

Genome Biology and Evolution / Mar 07, 2020

Popitsch, N., Huber, C. D., Buchumenski, I., Eisenberg, E., Jantsch, M., von Haeseler, A., & Gallach, M. (2020). A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals. Genome Biology and Evolution, 12(4), 345–357. https://doi.org/10.1093/gbe/evaa046

An inhibitor of complement C5 provides structural insights into activation

Proceedings of the National Academy of Sciences / Dec 23, 2019

Reichhardt, M. P., Johnson, S., Tang, T., Morgan, T., Tebeka, N., Popitsch, N., Deme, J. C., Jore, M. M., & Lea, S. M. (2019). An inhibitor of complement C5 provides structural insights into activation. Proceedings of the National Academy of Sciences, 117(1), 362–370. https://doi.org/10.1073/pnas.1909973116

Clinically actionable mutation profiles in patients with cancer identified by whole-genome sequencing

Molecular Case Studies / Apr 01, 2018

Schuh, A., Dreau, H., Knight, S. J. L., Ridout, K., Mizani, T., Vavoulis, D., Colling, R., Antoniou, P., Kvikstad, E. M., Pentony, M. M., Hamblin, A., Protheroe, A., Parton, M., Shah, K. A., Orosz, Z., Athanasou, N., Hassan, B., Flanagan, A. M., Ahmed, A., … Taylor, J. C. (2018). Clinically actionable mutation profiles in patients with cancer identified by whole-genome sequencing. Molecular Case Studies, 4(2), a002279. https://doi.org/10.1101/mcs.a002279

Supporting meetings with a goal-driven service-oriented multimedia environment

Proceedings of the first ACM international workshop on Multimedia service composition / Nov 11, 2005

Hummel, K. A., Jochum, W., Leitich, S., & Schandl, B. (2005). Supporting meetings with a goal-driven service-oriented multimedia environment. Proceedings of the First ACM International Workshop on Multimedia Service Composition. https://doi.org/10.1145/1099423.1099434

METIS: a flexible foundation for the unified management of multimedia assets

Multimedia Tools and Applications / Feb 16, 2007

King, R., Popitsch, N., & Westermann, U. (2007). METIS: a flexible foundation for the unified management of multimedia assets. Multimedia Tools and Applications, 33(3), 325–349. https://doi.org/10.1007/s11042-007-0101-3

METIS

Proceedings of the 12th annual ACM international conference on Multimedia / Oct 10, 2004

King, R., Popitsch, N., & Westermann, U. (2004). METIS. Proceedings of the 12th Annual ACM International Conference on Multimedia. https://doi.org/10.1145/1027527.1027695

Shep interacts with posttranscriptional regulators to control dendrite morphogenesis in sensory neurons

Developmental Biology / Dec 01, 2018

Olesnicky, E. C., Antonacci, S., Popitsch, N., Lybecker, M. C., Titus, M. B., Valadez, R., Derkach, P. G., Marean, A., Miller, K., Mathai, S. K., & Killian, D. J. (2018). Shep interacts with posttranscriptional regulators to control dendrite morphogenesis in sensory neurons. Developmental Biology, 444(2), 116–128. https://doi.org/10.1016/j.ydbio.2018.09.022

Whole-genome sequencing identifies homozygous BRCA2 deletion guiding treatment in dedifferentiated prostate cancer

Molecular Case Studies / Mar 09, 2017

Purshouse, K., Schuh, A., Fairfax, B. P., Knight, S., Antoniou, P., Dreau, H., Popitsch, N., Gatter, K., Roberts, I., Browning, L., Traill, Z., Kerr, D., Verrill, C., Tuthill, M., Taylor, J. C., & Protheroe, A. (2017). Whole-genome sequencing identifies homozygous BRCA2 deletion guiding treatment in dedifferentiated prostate cancer. Molecular Case Studies, 3(3), a001362. https://doi.org/10.1101/mcs.a001362

ReliableGenome: annotation of genomic regions with high/low variant calling concordance

Bioinformatics / Sep 07, 2016

Popitsch, N., Schuh, A., & Taylor, J. C. (2016). ReliableGenome: annotation of genomic regions with high/low variant calling concordance. Bioinformatics, 33(2), 155–160. https://doi.org/10.1093/bioinformatics/btw587

Performance optimization of the ORION peer-to-peer file sharing protocol for mobile Ad Hoc networks using unicast messaging

Abada, A. (n.d.). Performance optimization of the ORION peer-to-peer file sharing protocol for mobile Ad Hoc networks using unicast messaging. https://doi.org/10.22215/etd/2006-08159

CODOC: efficient access, analysis and compression of depth of coverage signals

Bioinformatics / May 28, 2014

Popitsch, N. (2014). CODOC: efficient access, analysis and compression of depth of coverage signals. Bioinformatics, 30(18), 2676–2677. https://doi.org/10.1093/bioinformatics/btu362

Targeting foam cell formation in inflammatory brain diseases by the histone modifier MS‐275

Annals of Clinical and Translational Neurology / Sep 30, 2020

Zierfuss, B., Weinhofer, I., Buda, A., Popitsch, N., Hess, L., Moos, V., Hametner, S., Kemp, S., Köhler, W., Forss‐Petter, S., Seiser, C., & Berger, J. (2020). Targeting foam cell formation in inflammatory brain diseases by the histone modifier MS‐275. Annals of Clinical and Translational Neurology, 7(11), 2161–2177. Portico. https://doi.org/10.1002/acn3.51200

GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data

Nucleic Acids Research / Mar 02, 2022

Giacopuzzi, E., Popitsch, N., & Taylor, J. C. (2022). GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data. Nucleic Acids Research, 50(5), 2522–2535. https://doi.org/10.1093/nar/gkac130

iPres 2016: 13th International Conference on Digital Preservation, Bern, Switzerland

Preservation, Digital Technology & Culture / Feb 03, 2017

iPres 2016: 13th International Conference on Digital Preservation, Bern, Switzerland. (2017). Preservation, Digital Technology & Culture, 45(4), 196–200. https://doi.org/10.1515/pdtc-2016-2222

DeepSNP: An End-to-End Deep Neural Network with Attention-Based Localization for Breakpoint Detection in Single-Nucleotide Polymorphism Array Genomic Data

Journal of Computational Biology / Jun 01, 2019

Eghbal-Zadeh, H., Fischer, L., Popitsch, N., Kromp, F., Taschner-Mandl, S., Gerber, T., Bozsaky, E., Ambros, P. F., Ambros, I. M., Widmer, G., & Moser, B. A. (2019). DeepSNP: An End-to-End Deep Neural Network with Attention-Based Localization for Breakpoint Detection in Single-Nucleotide Polymorphism Array Genomic Data. Journal of Computational Biology, 26(6), 572–596. https://doi.org/10.1089/cmb.2018.0172

VARAN-GIE: curation of genomic interval sets

Bioinformatics / Aug 21, 2018

Popitsch, N. (2018). VARAN-GIE: curation of genomic interval sets. Bioinformatics, 35(5), 868–870. https://doi.org/10.1093/bioinformatics/bty723

Identifying High-Risk CLL to Predict Early Relapse after FCR Based Treatment Using Whole Genome Sequencing: First Results from the Genomics England CLL Pilot

Blood / Dec 02, 2016

Robbe, P., Ridout, K., Becq, J., He, M., Clifford, R., Alsolami, R., Burns, A., Knight, S. J., Oates, M., Howard, D., Pettitt, A. R., Rendon, A., Popitsch, N., Hillmen, P., Taylor, J. C., Caulfield, M., Bentley, D., Turnbull, C., & Schuh, A. (2016). Identifying High-Risk CLL to Predict Early Relapse after FCR Based Treatment Using Whole Genome Sequencing: First Results from the Genomics England CLL Pilot. Blood, 128(22), 2022–2022. https://doi.org/10.1182/blood.v128.22.2022.2022

Keep your triples together

Proceedings of the 7th International Conference on Semantic Systems / Sep 07, 2011

Popitsch, N. (2011). Keep your triples together. Proceedings of the 7th International Conference on Semantic Systems. https://doi.org/10.1145/2063518.2063524

An Evaluation Approach for Dynamics-Aware Applications Using Linked Data

2010 Workshops on Database and Expert Systems Applications / Aug 01, 2010

Popitsch, N., Haslhofer, B., & Roochi, E. M. (2010). An Evaluation Approach for Dynamics-Aware Applications Using Linked Data. 2010 Workshops on Database and Expert Systems Applications. https://doi.org/10.1109/dexa.2010.52

Nanopanel2 calls phased low-frequency variants in Nanopore panel sequencing data

Bioinformatics / Jul 16, 2021

Popitsch, N., Preuner, S., & Lion, T. (2021). Nanopanel2 calls phased low-frequency variants in Nanopore panel sequencing data. Bioinformatics, 37(24), 4620–4625. https://doi.org/10.1093/bioinformatics/btab526

PF376 DIFFERENTIAL GENOMIC AND TRANSCRIPTOMIC EVENTS ASSOCIATED WITH HIGH-GRADE TRANSFORMATION OF CHRONIC LYMPHOCYTIC LEUKEMIA

HemaSphere / Jun 01, 2019

Klintman, J., Stamatopoulos, B., Ridout, K., Eyre, T. A., Lopez Pascua, L., Appleby, N., Knight, S., Dreau, H., Ehinger, M., Martín-Subero, J. I., Campo, E., Mansson, R., Rossi, D., Taylor, J., Vavoulis, D. V., & Schuh, A. (2019). PF376 DIFFERENTIAL GENOMIC AND TRANSCRIPTOMIC EVENTS ASSOCIATED WITH HIGH-GRADE TRANSFORMATION OF CHRONIC LYMPHOCYTIC LEUKEMIA. HemaSphere, 3(S1), 139–140. https://doi.org/10.1097/01.hs9.0000559716.92296.c9

Correction: The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation

PLOS Pathogens / Oct 16, 2015

Drecktrah, D., Lybecker, M., Popitsch, N., Rescheneder, P., Hall, L. S., & Samuels, D. S. (2015). Correction: The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation. PLOS Pathogens, 11(10), e1005242. https://doi.org/10.1371/journal.ppat.1005242

The MEKETREpository - Middle Kingdom Tomb and Artwork Descriptions on the Web

Research and Advanced Technology for Digital Libraries / Jan 01, 2011

Mader, C., Haslhofer, B., & Popitsch, N. (2011). The MEKETREpository - Middle Kingdom Tomb and Artwork Descriptions on the Web. Lecture Notes in Computer Science, 449–452. https://doi.org/10.1007/978-3-642-24469-8_47

Technologies for Semantic Project-Driven Work Environments

Emerging Technologies for Semantic Work Environments / Jan 01, 2008

Schandl, B., King, R., Popitsch, N., Rauter, B., & Povazay, M. (2008). Technologies for Semantic Project-Driven Work Environments. Emerging Technologies for Semantic Work Environments, 245–261. https://doi.org/10.4018/978-1-59904-877-2.ch014

mRNA stability and m6A are major determinants of subcellular mRNA localization in neurons

Molecular Cell / Aug 01, 2023

Loedige, I., Baranovskii, A., Mendonsa, S., Dantsuji, S., Popitsch, N., Breimann, L., Zerna, N., Cherepanov, V., Milek, M., Ameres, S., & Chekulaeva, M. (2023). mRNA stability and m6A are major determinants of subcellular mRNA localization in neurons. Molecular Cell, 83(15), 2709-2725.e10. https://doi.org/10.1016/j.molcel.2023.06.021

The identification of protein and RNA interactors of the splicing factor Caper in the adult Drosophila nervous system

Frontiers in Molecular Neuroscience / Jun 23, 2023

Titus, M. B., Chang, A. W., Popitsch, N., Ebmeier, C. C., Bono, J. M., & Olesnicky, E. C. (2023). The identification of protein and RNA interactors of the splicing factor Caper in the adult Drosophila nervous system. Frontiers in Molecular Neuroscience, 16. https://doi.org/10.3389/fnmol.2023.1114857

GREEN-DB: A framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data

Sep 19, 2020

Giacopuzzi, E., Popitsch, N., & Taylor, J. (2020). GREEN-DB: A framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data. https://doi.org/10.1101/2020.09.17.301960

Deep SNP: An End-to-end Deep Neural Network with Attention-based Localization for Break-point Detection in SNP Array Genomic data

Jun 24, 2018

Eghbal-zadeh, H., Fischer, L., Popitsch, N., Kromp, F., Taschner-Mandl, S., Koutini, K., Gerber, T., Bozsaky, E., Ambros, P. F., Ambros, I. M., Widmer, G., & Moser, B. A. (2018). Deep SNP: An End-to-end Deep Neural Network with Attention-based Localization for Break-point Detection in SNP Array Genomic data. https://doi.org/10.1101/354423

Transcriptome-Wide Profiling of RNA Stability

Methods in Molecular Biology / Oct 26, 2021

Fasching, N., Petržílek, J., Popitsch, N., Herzog, V. A., & Ameres, S. L. (2021). Transcriptome-Wide Profiling of RNA Stability. Post-Transcriptional Gene Regulation, 311–330. https://doi.org/10.1007/978-1-0716-1851-6_17

Abstract B28: A cross-species enhancer activity analysis approach to identify the Ewing sarcoma cell of origin

Cancer Research / Jul 15, 2020

Grissenberger, S., Poetsch, A., Heinzl, M., Morelli, L., Sheffield, N., Popitsch, N., Kovar, H., & Distel, M. (2020). Abstract B28: A cross-species enhancer activity analysis approach to identify the Ewing sarcoma cell of origin. Cancer Research, 80(14_Supplement), B28–B28. https://doi.org/10.1158/1538-7445.pedca19-b28

Abstract B28: A cross-species enhancer activity analysis approach to identify the Ewing sarcoma cell of origin

Cancer Research / Jul 15, 2020

Grissenberger, S., Poetsch, A., Heinzl, M., Morelli, L., Sheffield, N., Popitsch, N., Kovar, H., & Distel, M. (2020). Abstract B28: A cross-species enhancer activity analysis approach to identify the Ewing sarcoma cell of origin. Cancer Research, 80(14_Supplement), B28–B28. https://doi.org/10.1158/1538-7445.pedca19-b28

A novel inhibitor of complement C5 provides structural insights into activation

May 23, 2019

Reichhardt, M. P., Johnson, S., Tang, T., Morgan, T., Tebeka, N., Popitsch, N., Deme, J. C., Jore, M. M., & Lea, S. M. (2019). A novel inhibitor of complement C5 provides structural insights into activation. https://doi.org/10.1101/647354

Identifikation einer Heterozygoten RIT1-Mutation in einem fetalen Fall von Noonan Syndrom mit gonadoblastoider, testiculärer Dysplasie mittels Exom-Sequenzierung

Geburtshilfe und Frauenheilkunde / Jul 03, 2015

Reischer, T., Schmid, M., Vodopiutz, J., Krampl-Bettlheim, E., Popitsch, N., & Streubel, B. (2015). Identifikation einer Heterozygoten RIT1-Mutation in einem fetalen Fall von Noonan Syndrom mit gonadoblastoider, testiculärer Dysplasie mittels Exom-Sequenzierung. Geburtshilfe Und Frauenheilkunde, 75(06). https://doi.org/10.1055/s-0035-1555047

Warren, Prof. Graham Barry, (born 25 Feb. 1948), Scientific Director, Max F. Perutz Laboratories, Vienna, 2007–17, now Professor Emeritus, University and Medical University of Vienna

Who's Who / Dec 01, 2007

Warren, Prof. Graham Barry, (born 25 Feb. 1948), Scientific Director, Max F. Perutz Laboratories, Vienna, 2007–17, now Professor Emeritus, University and Medical University of Vienna. (2007). Who’s Who. https://doi.org/10.1093/ww/9780199540884.013.38930

WebS 2012 Workshop Committee

2012 23rd International Workshop on Database and Expert Systems Applications / Sep 01, 2012

WebS 2012 Workshop Committee. (2012). 2012 23rd International Workshop on Database and Expert Systems Applications. https://doi.org/10.1109/dexa.2012.74

Dynamically Generated Scalable Vector Graphics (SVG) for Barrier-Free Web-Applications

Lecture Notes in Computer Science / Jan 01, 2006

Altmanninger, K., & Wöß, W. (2006). Dynamically Generated Scalable Vector Graphics (SVG) for Barrier-Free Web-Applications. Computers Helping People with Special Needs, 128–135. https://doi.org/10.1007/11788713_20

DISCLOSURE OF FUNDING ARRANGEMENTS Disclosure of the funding arrangement

Civil Procedure / Oct 02, 2012

DISCLOSURE OF FUNDING ARRANGEMENTS Disclosure of the funding arrangement. (2012). Civil Procedure, 129–129. https://doi.org/10.4324/9781843145684-22

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