Sumeet K. Tiwari
Bioinformatic researcher at Quadram Institute Bioscience
Research Interests
About
Publications
Risk of Transmission of Antimicrobial Resistant Escherichia coli from Commercial Broiler and Free-Range Retail Chicken in India
Frontiers in Microbiology / Nov 13, 2017
Hussain, A., Shaik, S., Ranjan, A., Nandanwar, N., Tiwari, S. K., Majid, M., Baddam, R., Qureshi, I. A., Semmler, T., Wieler, L. H., Islam, M. A., Chakravortty, D., & Ahmed, N. (2017). Risk of Transmission of Antimicrobial Resistant Escherichia coli from Commercial Broiler and Free-Range Retail Chicken in India. Frontiers in Microbiology, 8. https://doi.org/10.3389/fmicb.2017.02120
Comparative Genomic Analysis of Globally Dominant ST131 Clone with Other Epidemiologically Successful Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages
mBio / Nov 08, 2017
Shaik, S., Ranjan, A., Tiwari, S. K., Hussain, A., Nandanwar, N., Kumar, N., Jadhav, S., Semmler, T., Baddam, R., Islam, M. A., Alam, M., Wieler, L. H., Watanabe, H., & Ahmed, N. (2017). Comparative Genomic Analysis of Globally Dominant ST131 Clone with Other Epidemiologically Successful Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages. MBio, 8(5). https://doi.org/10.1128/mbio.01596-17
Molecular Epidemiology and Genome Dynamics of New Delhi Metallo-β-Lactamase-Producing Extraintestinal Pathogenic Escherichia coli Strains from India
Antimicrobial Agents and Chemotherapy / Nov 01, 2016
Ranjan, A., Shaik, S., Mondal, A., Nandanwar, N., Hussain, A., Semmler, T., Kumar, N., Tiwari, S. K., Jadhav, S., Wieler, L. H., & Ahmed, N. (2016). Molecular Epidemiology and Genome Dynamics of New Delhi Metallo-β-Lactamase-Producing Extraintestinal Pathogenic Escherichia coli Strains from India. Antimicrobial Agents and Chemotherapy, 60(11), 6795–6805. https://doi.org/10.1128/aac.01345-16
Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections
mBio / Sep 06, 2017
Ranjan, A., Shaik, S., Nandanwar, N., Hussain, A., Tiwari, S. K., Semmler, T., Jadhav, S., Wieler, L. H., Alam, M., Colwell, R. R., & Ahmed, N. (2017). Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections. MBio, 8(4). https://doi.org/10.1128/mbio.01070-17
Genomic Diversity and Virulence Potential of ESBL- and AmpC-β-Lactamase-Producing Escherichia coli Strains From Healthy Food Animals Across Europe
Frontiers in Microbiology / Apr 01, 2021
Ewers, C., de Jong, A., Prenger-Berninghoff, E., El Garch, F., Leidner, U., Tiwari, S. K., & Semmler, T. (2021). Genomic Diversity and Virulence Potential of ESBL- and AmpC-β-Lactamase-Producing Escherichia coli Strains From Healthy Food Animals Across Europe. Frontiers in Microbiology, 12. https://doi.org/10.3389/fmicb.2021.626774
Genome Dynamics and Molecular Infection Epidemiology of Multidrug-Resistant Helicobacter pullorum Isolates Obtained from Broiler and Free-Range Chickens in India
Applied and Environmental Microbiology / Jan 01, 2017
Qumar, S., Majid, M., Kumar, N., Tiwari, S. K., Semmler, T., Devi, S., Baddam, R., Hussain, A., Shaik, S., & Ahmed, N. (2017). Genome Dynamics and Molecular Infection Epidemiology of Multidrug-Resistant Helicobacter pullorum Isolates Obtained from Broiler and Free-Range Chickens in India. Applied and Environmental Microbiology, 83(1). https://doi.org/10.1128/aem.02305-16
Contig-Layout-Authenticator (CLA): A Combinatorial Approach to Ordering and Scaffolding of Bacterial Contigs for Comparative Genomics and Molecular Epidemiology
PLOS ONE / Jun 01, 2016
Shaik, S., Kumar, N., Lankapalli, A. K., Tiwari, S. K., Baddam, R., & Ahmed, N. (2016). Contig-Layout-Authenticator (CLA): A Combinatorial Approach to Ordering and Scaffolding of Bacterial Contigs for Comparative Genomics and Molecular Epidemiology. PLOS ONE, 11(6), e0155459. https://doi.org/10.1371/journal.pone.0155459
Genome-wide association reveals host-specific genomic traits in Escherichia coli
BMC Biology / Apr 11, 2023
Tiwari, S. K., van der Putten, B. C. L., Fuchs, T. M., Vinh, T. N., Bootsma, M., Oldenkamp, R., La Ragione, R., Matamoros, S., Hoa, N. T., Berens, C., Leng, J., Álvarez, J., Ferrandis-Vila, M., Ritchie, J. M., Fruth, A., Schwarz, S., Domínguez, L., Ugarte-Ruiz, M., Bethe, A., … Schultsz, C. (2023). Genome-wide association reveals host-specific genomic traits in Escherichia coli. BMC Biology, 21(1). https://doi.org/10.1186/s12915-023-01562-w
Using Unique ORFan Genes as Strain-specific Identifiers for Escherichia Coli
Jun 25, 2021
Ferrandis-Vila, M., Tiwari, S. K., Mamerow, S., Semmler, T., Menge, C., & Berens, C. (2021). Using Unique ORFan Genes as Strain-specific Identifiers for Escherichia Coli. https://doi.org/10.21203/rs.3.rs-620539/v1
Comprehensive profiling of the human intestinal DNA virome and prediction of disease-associated bacterial hosts in severe Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)
Jun 29, 2023
Hsieh, S.-Y., Savva, G. M., Telatin, A., Tiwari, S. K., Tariq, M. A., Newberry, F., Seton, K. A., Booth, C., Bansal, A. S., Wileman, T., Adriaenssens, E. M., & Carding, S. R. (2023). Comprehensive profiling of the human intestinal DNA virome and prediction of disease-associated bacterial hosts in severe Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS). https://doi.org/10.1101/2023.06.29.23291738
Investigating antibody reactivity to the intestinal microbiome in severe myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS)
May 23, 2023
Seton, K. A., Defernez, M., Telatin, A., Tiwari, S. K., Savva, G. M., Hayhoe, A., Noble, A., Carvalho, A., James, S., Bansal, A., Wileman, T., & Carding, S. R. (2023). Investigating antibody reactivity to the intestinal microbiome in severe myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS). https://doi.org/10.1101/2023.05.21.23290299
Identification of SNP Targeted Pathways From Genome-wide Association Study (GWAS) Data
May 22, 2019
Bakir-Gungor, B., & Sezerman, O. U. (2019). Identification of SNP Targeted Pathways From Genome-wide Association Study (GWAS) Data. https://doi.org/10.21203/rs.2.1035/v2
A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses
Microbial Genomics / Jul 18, 2023
Elek, C. K. A., Brown, T. L., Le Viet, T., Evans, R., Baker, D. J., Telatin, A., Tiwari, S. K., Al-Khanaq, H., Thilliez, G., Kingsley, R. A., Hall, L. J., Webber, M. A., & Adriaenssens, E. M. (2023). A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses. Microbial Genomics, 9(7). https://doi.org/10.1099/mgen.0.001065
A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses
Mar 09, 2023
Elek, C. K. A., Brown, T. L., Viet, T. L., Evans, R., Baker, D. J., Telatin, A., Tiwari, S. K., Al-Khanaq, H., Thilliez, G., Kingsley, R. A., Hall, L. J., Webber, M. A., & Adriaenssens, E. M. (2023). A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses. https://doi.org/10.1101/2023.03.09.531871
Using unique ORFan genes as strain-specific identifiers for Escherichia coli
BMC Microbiology / May 18, 2022
Ferrandis-Vila, M., Tiwari, S. K., Mamerow, S., Semmler, T., Ferrandis-Vila, M., Tiwari, S. K., van der Putten, B., Trung, N. V., Oldenkamp, R., Bootsma, M., Matamoros, S., Ngo, H. T., Alvarez, J., Ritchie, J. M., Fivian-Hughes, A., Fruth, A., Leng, J., La Ragione, R. M., … Ugarte-Ruiz, M. (2022). Using unique ORFan genes as strain-specific identifiers for Escherichia coli. BMC Microbiology, 22(1). https://doi.org/10.1186/s12866-022-02508-y
Genome-wide association reveals host-specific genomic traits in Escherichia coli
Feb 09, 2022
Tiwari, S. K., van der Putten, B. C. L., Fuchs, T. M., Vinh, T. N., Bootsma, M., Oldenkamp, R., La Ragione, R., Matamoros, S., Hoa, N. T., Berens, C., Leng, J., Álvarez, J., Ferrandis-Vila, M., Ritchie, J. M., Fruth, A., Schwarz, S., Domínguez, L., Ugarte-Ruiz, M., Bethe, A., … Schultsz, C. (2022). Genome-wide association reveals host-specific genomic traits in Escherichia coli. https://doi.org/10.1101/2022.02.08.479532
Education
University of Hyderabad
M.Tech in Bioinformatics, Biotechnology and Bioinformatics
JNTUA College of Engineering - Pulivendula
B.Tech in Biotechnology, Department of Biotechnology
Freie Universität Berlin
Ph. D, Natural Sciences (Bioinformatician) / November, 2021
Experience
Quadram Institute Bioscience
Bioinformatic researcher / July, 2021 — Present
Robert Koch Institute
Doctoral Student / June, 2017 — June, 2021
University of Hyderabad
Project Junior Research fellow / August, 2015 — May, 2017
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