Francisco JRC Coelho
Researcher/ Microbiome/ Bussiness enthusiast
Research Interests
About
Publications
The sponge microbiome within the greater coral reef microbial metacommunity
Nature Communications / Apr 09, 2019
Cleary, D. F. R., Swierts, T., Coelho, F. J. R. C., Polónia, A. R. M., Huang, Y. M., Ferreira, M. R. S., Putchakarn, S., Carvalheiro, L., van der Ent, E., Ueng, J.-P., Gomes, N. C. M., & de Voogd, N. J. (2019). The sponge microbiome within the greater coral reef microbial metacommunity. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-09537-8
Interactive effects of global climate change and pollution on marine microbes: the way ahead
Ecology and Evolution / Apr 23, 2013
Coelho, F. J. R. C., Santos, A. L., Coimbra, J., Almeida, A., Cunha, Â., Cleary, D. F. R., Calado, R., & Gomes, N. C. M. (2013). Interactive effects of global climate change and pollution on marine microbes: the way ahead. Ecology and Evolution, 3(6), 1808–1818. Portico. https://doi.org/10.1002/ece3.565
Unraveling the interactive effects of climate change and oil contamination on laboratory‐simulated estuarine benthic communities
Global Change Biology / Jan 05, 2015
Coelho, F. J. R. C., Cleary, D. F. R., Rocha, R. J. M., Calado, R., Castanheira, J. M., Rocha, S. M., Silva, A. M. S., Simões, M. M. Q., Oliveira, V., Lillebø, A. I., Almeida, A., Cunha, Â., Lopes, I., Ribeiro, R., Moreira‐Santos, M., Marques, C. R., Costa, R., Pereira, R., & Gomes, N. C. M. (2015). Unraveling the interactive effects of climate change and oil contamination on laboratory‐simulated estuarine benthic communities. Global Change Biology, 21(5), 1871–1886. Portico. https://doi.org/10.1111/gcb.12801
Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer
Journal of Microbiology and Biotechnology / Mar 28, 2012
Louvado, A. (2012). Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer. Journal of Microbiology and Biotechnology, 22(3), 283–291. https://doi.org/10.4014/jmb.1110.10041
Effects of Monospecific Banks of Salt Marsh Vegetation on Sediment Bacterial Communities
Microbial Ecology / May 22, 2010
Oliveira, V., Santos, A. L., Coelho, F., Gomes, N. C. M., Silva, H., Almeida, A., & Cunha, Â. (2010). Effects of Monospecific Banks of Salt Marsh Vegetation on Sediment Bacterial Communities. Microbial Ecology, 60(1), 167–179. https://doi.org/10.1007/s00248-010-9678-6
Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics
FEMS Microbiology Ecology / Jul 19, 2011
Santos, L., Santos, A. L., Coelho, F. J. R. C., Gomes, N. C. M., Dias, J. M., Cunha, Â., & Almeida, A. (2011). Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics: Bacterial activity in the SML and estuarine hydrodynamics. FEMS Microbiology Ecology, 77(3), 636–646. https://doi.org/10.1111/j.1574-6941.2011.01147.x
Bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture system of sea bass (Dicentrarchus labrax): A seasonal survey
Aquaculture / Mar 01, 2019
Duarte, L. N., Coelho, F. J. R. C., Cleary, D. F. R., Bonifácio, D., Martins, P., & Gomes, N. C. M. (2019). Bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture system of sea bass (Dicentrarchus labrax): A seasonal survey. Aquaculture, 503, 59–69. https://doi.org/10.1016/j.aquaculture.2018.12.066
Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz
Scientific Reports / Oct 20, 2016
Coelho, F. J. R. C., Louvado, A., Domingues, P. M., Cleary, D. F. R., Ferreira, M., Almeida, A., Cunha, M. R., Cunha, Â., & Gomes, N. C. M. (2016). Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz. Scientific Reports, 6(1). https://doi.org/10.1038/srep35272
Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution
Molecular Ecology / Aug 26, 2016
Coelho, F. J. R. C., Cleary, D. F. R., Costa, R., Ferreira, M., Polónia, A. R. M., Silva, A. M. S., Simões, M. M. Q., Oliveira, V., & Gomes, N. C. M. (2016). Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution. Molecular Ecology, 25(18), 4645–4659. Portico. https://doi.org/10.1111/mec.13779
Seasonal patterns of bacterioplankton composition in a semi-intensive European seabass (Dicentrarchus labrax) aquaculture system
Aquaculture / Mar 01, 2018
Martins, P., Coelho, F. J. R. C., Cleary, D. F. R., Pires, A. C. C., Marques, B., Rodrigues, A. M., Quintino, V., & Gomes, N. C. M. (2018). Seasonal patterns of bacterioplankton composition in a semi-intensive European seabass (Dicentrarchus labrax) aquaculture system. Aquaculture, 490, 240–250. https://doi.org/10.1016/j.aquaculture.2018.02.038
Micro-eukaryotic plankton diversity in an intensive aquaculture system for production of Scophthalmus maximus and Solea senegalensis
Aquaculture / Mar 01, 2018
Boaventura, C. M., Coelho, F. J. R. C., Martins, P. T., Pires, A. C. C., Duarte, L. N., Uetanabaro, A. P. T., Cleary, D. F. R., & Gomes, N. C. M. (2018). Micro-eukaryotic plankton diversity in an intensive aquaculture system for production of Scophthalmus maximus and Solea senegalensis. Aquaculture, 490, 321–328. https://doi.org/10.1016/j.aquaculture.2018.02.033
Corrigendum: Formation of calcium chloride brines in volcaniclastic-rich sediments
Frontiers in Earth Science / Nov 03, 2022
Sena, C., Parkhurst, D. L., Tepley |||, F. J., Jiang, F., Land, C. van der, Coelho, F. J., Oliveira, V., Lever, M. A., Ishizuka, O., & Arculus, R. (2022). Corrigendum: Formation of calcium chloride brines in volcaniclastic-rich sediments. Frontiers in Earth Science, 10. https://doi.org/10.3389/feart.2022.1063554
Study of the influence of tributyrin-supplemented diets on the gut bacterial communities of rainbow trout (Oncorhynchus mykiss)
Scientific Reports / Mar 07, 2024
Louvado, A., Coelho, F. J. R. C., Palma, M., Magnoni, L. J., Silva-Brito, F., Ozório, R. O. A., Cleary, D. F. R., Viegas, I., & Gomes, N. C. M. (2024). Study of the influence of tributyrin-supplemented diets on the gut bacterial communities of rainbow trout (Oncorhynchus mykiss). Scientific Reports, 14(1). https://doi.org/10.1038/s41598-024-55660-y
Effects of Reduced Seawater pH and Oil Contamination on Bacterial Communities and Biochemical Markers of Estuarine Animal Hosts
Environments / Feb 17, 2024
Louvado, A., Galhano, V., Lima, F., Cleary, D. F. R., Lopes, I., Gomes, N. C. M., & Coelho, F. J. R. C. (2024). Effects of Reduced Seawater pH and Oil Contamination on Bacterial Communities and Biochemical Markers of Estuarine Animal Hosts. Environments, 11(2), 37. https://doi.org/10.3390/environments11020037
A Study of Sponge Symbionts from Different Light Habitats
Microbial Ecology / Aug 19, 2023
Cleary, D. F. R., de Voogd, N. J., Stuij, T. M., Swierts, T., Oliveira, V., Polónia, A. R. M., Louvado, A., Gomes, N. C. M., & Coelho, F. J. R. C. (2023). A Study of Sponge Symbionts from Different Light Habitats. Microbial Ecology, 86(4), 2819–2837. https://doi.org/10.1007/s00248-023-02267-x
Brachybacterium atlanticum sp. nov., a novel marine bacterium isolated from the Atlantic Ocean
International Journal of Systematic and Evolutionary Microbiology / Aug 04, 2023
de Castro, I., Ribeiro, S., Oliveira, V., Coelho, F. J. R. C., de Lurdes Dapkevicius, M., de Azevedo, E. B., & Barcelos e Ramos, J. (2023). Brachybacterium atlanticum sp. nov., a novel marine bacterium isolated from the Atlantic Ocean. International Journal of Systematic and Evolutionary Microbiology, 73(8). https://doi.org/10.1099/ijsem.0.005959
Emiliania huxleyi—Bacteria Interactions under Increasing CO2 Concentrations
Microorganisms / Dec 13, 2022
Barcelos e Ramos, J., Ribeiro, S. C., Schulz, K. G., Coelho, F. J. R. D. C., Oliveira, V., Cunha, A., Gomes, N. C. M., Brownlee, C., Passow, U., & de Azevedo, E. B. (2022). Emiliania huxleyi—Bacteria Interactions under Increasing CO2 Concentrations. Microorganisms, 10(12), 2461. https://doi.org/10.3390/microorganisms10122461
In vitro study of the modulatory effects of heat-killed bacterial biomass on aquaculture bacterioplankton communities
Scientific Reports / Nov 16, 2022
Sousa, J. M. G., Louvado, A., Coelho, F. J. R. C., Oliveira, V., Oliveira, H., Cleary, D. F. R., & Gomes, N. C. M. (2022). In vitro study of the modulatory effects of heat-killed bacterial biomass on aquaculture bacterioplankton communities. Scientific Reports, 12(1). https://doi.org/10.1038/s41598-022-23439-8
Spatial and environmental variables structure sponge symbiont communities
Molecular Ecology / Aug 10, 2022
Cleary, D. F. R., Polónia, A. R. M., Swierts, T., Coelho, F. J. R. C., de Voogd, N. J., & Gomes, N. C. M. (2022). Spatial and environmental variables structure sponge symbiont communities. Molecular Ecology, 31(19), 4932–4948. Portico. https://doi.org/10.1111/mec.16631
Formation of calcium chloride brines in volcaniclastic-rich sediments
Frontiers in Earth Science / Sep 21, 2022
Sena, C., Parkhurst, D. L., Tepley |||, F. J., Jiang, F., van der Land, C., Coelho, F. J., Oliveira, V., Lever, M. A., Ishizuka, O., & Arculus, R. (2022). Formation of calcium chloride brines in volcaniclastic-rich sediments. Frontiers in Earth Science, 10. https://doi.org/10.3389/feart.2022.869567
Humic substances modulate fish bacterial communities in a marine recirculating aquaculture system
Aquaculture / Nov 01, 2021
Louvado, A., Cleary, D. F. R., Pereira, L. F., Coelho, F. J. R. C., Pousão-Ferreira, P., Ozório, R. O. A., & Gomes, N. C. M. (2021). Humic substances modulate fish bacterial communities in a marine recirculating aquaculture system. Aquaculture, 544, 737121. https://doi.org/10.1016/j.aquaculture.2021.737121
Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
Annals of Microbiology / Mar 06, 2020
Ferreira, M. R. S., Cleary, D. F. R., Coelho, F. J. R. C., Gomes, N. C. M., Huang, Y. M., Polónia, A. R. M., & de Voogd, N. J. (2020). Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor. Annals of Microbiology, 70(1). https://doi.org/10.1186/s13213-020-01546-z
Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia
Marine Biology Research / Nov 25, 2020
Pires, A. C. da C., Oliveira, V., Cleary, D. F. R., Polónia, A. R. M., Coelho, F. J. R. C., Waheed, Z., de Voogd, N. J., & Gomes, N. C. M. (2020). Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia. Marine Biology Research, 16(10), 729–743. https://doi.org/10.1080/17451000.2021.1891250
Effect of glycerol feed-supplementation on seabass metabolism and gut microbiota
Applied Microbiology and Biotechnology / Aug 26, 2020
Louvado, A., Coelho, F. J. R. C., Palma, M., Tavares, L. C., Ozorio, R. O. A., Magnoni, L., Viegas, I., & Gomes, N. C. M. (2020). Effect of glycerol feed-supplementation on seabass metabolism and gut microbiota. Applied Microbiology and Biotechnology, 104(19), 8439–8453. https://doi.org/10.1007/s00253-020-10809-3
Characterization of bacterioplankton communities from a hatchery recirculating aquaculture system (RAS) for juvenile sole (Solea senegalensis) production
PLOS ONE / Jan 25, 2019
Duarte, L. N., Coelho, F. J. R. C., Oliveira, V., Cleary, D. F. R., Martins, P., & Gomes, N. C. M. (2019). Characterization of bacterioplankton communities from a hatchery recirculating aquaculture system (RAS) for juvenile sole (Solea senegalensis) production. PLOS ONE, 14(1), e0211209. https://doi.org/10.1371/journal.pone.0211209
Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment
Journal of Applied Microbiology / May 20, 2019
Louvado, A., Coelho, F. J. R. C., Oliveira, V., Gomes, H., Cleary, D. F. R., Simões, M. M. Q., Cunha, A., & Gomes, N. C. M. (2019). Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment. Journal of Applied Microbiology, 127(1), 134–149. Portico. https://doi.org/10.1111/jam.14261
Independent and interactive effects of reduced seawater pH and oil contamination on subsurface sediment bacterial communities
Environmental Science and Pollution Research / Sep 22, 2018
Louvado, A., Coelho, F. J. R. C., Gomes, H., Cleary, D. F. R., Cunha, Â., & Gomes, N. C. M. (2018). Independent and interactive effects of reduced seawater pH and oil contamination on subsurface sediment bacterial communities. Environmental Science and Pollution Research, 25(32), 32756–32766. https://doi.org/10.1007/s11356-018-3214-5
Compositional analysis of archaeal communities in high and low microbial abundance sponges in the Misool coral reef system, Indonesia
Marine Biology Research / Jul 03, 2018
Polónia, A. R. M., Cleary, D. F. R., Coelho, F. J. R. da C., Becking, L. E., de Voogd, N. J., Toha, A. H. A., & Gomes, N. C. M. (2018). Compositional analysis of archaeal communities in high and low microbial abundance sponges in the Misool coral reef system, Indonesia. Marine Biology Research, 14(6), 537–550. https://doi.org/10.1080/17451000.2018.1498977
Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems
Microbial Ecology / Jul 11, 2017
Coelho, F. J. R. C., Cleary, D. F. R., Gomes, N. C. M., Pólonia, A. R. M., Huang, Y. M., Liu, L.-L., & de Voogd, N. J. (2017). Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems. Microbial Ecology, 75(1), 239–254. https://doi.org/10.1007/s00248-017-1023-x
Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter‐tidal estuarine environment
Marine Ecology / Mar 15, 2017
Cleary, D. F. R., Coelho, F. J. R. C., Oliveira, V., Gomes, N. C. M., & Polónia, A. R. M. (2017). Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter‐tidal estuarine environment. Marine Ecology, 38(2). Portico. https://doi.org/10.1111/maec.12411
Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment
Marine Genomics / Oct 01, 2016
Polónia, A. R. M., Cleary, D. F. R., Freitas, R., Coelho, F. J. R. da C., de Voogd, N. J., & Gomes, N. C. M. (2016). Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment. Marine Genomics, 29, 69–80. https://doi.org/10.1016/j.margen.2016.04.014
Development of a molecular methodology for fast detection of Photobacterium damselae subspecies in water samples
Aquaculture / Jan 01, 2015
Martins, P., Navarro, R. V. V., Coelho, F. J. R. C., & Gomes, N. C. M. (2015). Development of a molecular methodology for fast detection of Photobacterium damselae subspecies in water samples. Aquaculture, 435, 137–142. https://doi.org/10.1016/j.aquaculture.2014.09.028
Heterotrophic activities of neustonic and planktonic bacterial communities in an estuarine environment (Ria de Aveiro)
Journal of Plankton Research / Aug 21, 2013
Santos, L., Santos, A. L., Coelho, F. J. R. C., Marcial Gomes, N. C., Dias, J. M., Cunha, A., & Almeida, A. (2013). Heterotrophic activities of neustonic and planktonic bacterial communities in an estuarine environment (Ria de Aveiro). Journal of Plankton Research, 36(1), 230–242. https://doi.org/10.1093/plankt/fbt084
Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools
Scientific Reports / Nov 11, 2014
Rocha, J., Coelho, F. J. R. C., Peixe, L., Gomes, N. C. M., & Calado, R. (2014). Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools. Scientific Reports, 4(1). https://doi.org/10.1038/srep06986
Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities
Global Change Biology / May 29, 2013
Coelho, F. J. R. C., Rocha, R. J. M., Pires, A. C. C., Ladeiro, B., Castanheira, J. M., Costa, R., Almeida, A., Cunha, Â., Lillebø, A. I., Ribeiro, R., Pereira, R., Lopes, I., Marques, C., Moreira‐Santos, M., Calado, R., Cleary, D. F. R., & Gomes, N. C. M. (2013). Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities. Global Change Biology, 19(8), 2584–2595. Portico. https://doi.org/10.1111/gcb.12227
SELECTIVE CULTURES FOR THE ISOLATION OF BIOSURFACTANT PRODUCING BACTERIA: COMPARISON OF DIFFERENT COMBINATIONS OF ENVIRONMENTAL INOCULA AND HYDROPHOBIC CARBON SOURCES
Preparative Biochemistry and Biotechnology / Feb 01, 2013
Domingues, P. M., Louvado, A., Oliveira, V., Coelho, F. J. C. R., Almeida, A., Gomes, N. C. M., & Cunha, A. (2013). SELECTIVE CULTURES FOR THE ISOLATION OF BIOSURFACTANT PRODUCING BACTERIA: COMPARISON OF DIFFERENT COMBINATIONS OF ENVIRONMENTAL INOCULA AND HYDROPHOBIC CARBON SOURCES. Preparative Biochemistry and Biotechnology, 43(3), 237–255. https://doi.org/10.1080/10826068.2012.719848
Exploring hydrocarbonoclastic bacterial communities in the estuarine surface microlayer
Aquatic Microbial Ecology / Sep 01, 2011
Coelho, F., Sousa, S., Santos, L., Santos, A., Almeida, A., Gomes, N., & Cunha, Â. (2011). Exploring hydrocarbonoclastic bacterial communities in the estuarine surface microlayer. Aquatic Microbial Ecology, 64(2), 185–195. https://doi.org/10.3354/ame01526
Education
University of Aveiro
PhD in Biology – specialization in Microbiology / October, 2013
University of Aveiro
Master in Microbiology / December, 2008
University of Aveiro
Degree in Biology (Licenciatura) / July, 2007
Experience
University of Aveiro
Researcher / January, 2019 — February, 2023
Postdoc / November, 2014 — December, 2018
InnerCore Microbiome
CEO / October, 2020 — December, 2022
Co-founder and CEO
DNA TRUSTAG
Co-founder / January, 2016 — October, 2018
University of Aveiro
Ph.D. Student / March, 2009 — October, 2013
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