Asst. Prof. Eng. Davide Verzotto, Ph.D.
Assistant Professor of Computer Science, Centre for Higher Defence Studies (CASD) - School of Advanced Studies, Italian Defence General Staff, Rome
Research Interests
About
Publications
Alignment-free phylogeny of whole genomes using underlying subwords
Algorithms for Molecular Biology / Dec 01, 2012
Comin, M., & Verzotto, D. (2012). Alignment-free phylogeny of whole genomes using underlying subwords. Algorithms for Molecular Biology, 7(1). https://doi.org/10.1186/1748-7188-7-34
Understanding the microbial basis of body odor in pre-pubescent children and teenagers
Microbiome / Nov 29, 2018
Lam, T. H., Verzotto, D., Brahma, P., Ng, A. H. Q., Hu, P., Schnell, D., Tiesman, J., Kong, R., Ton, T. M. U., Li, J., Ong, M., Lu, Y., Swaile, D., Liu, P., Liu, J., & Nagarajan, N. (2018). Understanding the microbial basis of body odor in pre-pubescent children and teenagers. Microbiome, 6(1). https://doi.org/10.1186/s40168-018-0588-z
Biological Knowledge Discovery Handbook
Dec 16, 2013
Elloumi, M., & Zomaya, A. Y. (Eds.). (2013). Biological Knowledge Discovery Handbook. https://doi.org/10.1002/9781118617151
The Irredundant Class Method for Remote Homology Detection of Protein Sequences
Journal of Computational Biology / Dec 01, 2011
Comin, M., & Verzotto, D. (2011). The Irredundant Class Method for Remote Homology Detection of Protein Sequences. Journal of Computational Biology, 18(12), 1819–1829. https://doi.org/10.1089/cmb.2010.0171
Algorithms in Computational Molecular Biology
Dec 23, 2010
Elloumi, M., & Zomaya, A. Y. (Eds.). (2010). Algorithms in Computational Molecular Biology. https://doi.org/10.1002/9780470892107
Classification of protein sequences by means of irredundant patterns
BMC Bioinformatics / Jan 01, 2010
Comin, M., & Verzotto, D. (2010). Classification of protein sequences by means of irredundant patterns. BMC Bioinformatics, 11(S1). https://doi.org/10.1186/1471-2105-11-s1-s16
Classification of protein sequences by means of irredundant patterns
BMC Bioinformatics / Jan 01, 2010
Comin, M., & Verzotto, D. (2010). Classification of protein sequences by means of irredundant patterns. BMC Bioinformatics, 11(S1). https://doi.org/10.1186/1471-2105-11-s1-s16
Beyond Fixed-Resolution Alignment-Free Measures for Mammalian Enhancers Sequence Comparison
IEEE/ACM Transactions on Computational Biology and Bioinformatics / Jul 01, 2014
Comin, M., & Verzotto, D. (2014). Beyond Fixed-Resolution Alignment-Free Measures for Mammalian Enhancers Sequence Comparison. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 11(4), 628–637. https://doi.org/10.1109/tcbb.2014.2306830
Whole-Genome Phylogeny by Virtue of Unic Subwords
2012 23rd International Workshop on Database and Expert Systems Applications / Sep 01, 2012
Comin, M., & Verzotto, D. (2012). Whole-Genome Phylogeny by Virtue of Unic Subwords. 2012 23rd International Workshop on Database and Expert Systems Applications. https://doi.org/10.1109/dexa.2012.10
Pattern Recognition in Computational Molecular Biology
Nov 19, 2015
Elloumi, M., Iliopoulos, C. S., Wang, J. T. L., & Zomaya, A. Y. (Eds.). (2015). Pattern Recognition in Computational Molecular Biology. https://doi.org/10.1002/9781119078845
OPTIMA: sensitive and accurate whole-genome alignment of error-prone genomic maps by combinatorial indexing and technology-agnostic statistical analysis
GigaScience / Jan 19, 2016
Verzotto, D., M. Teo, A. S., Hillmer, A. M., & Nagarajan, N. (2016). OPTIMA: sensitive and accurate whole-genome alignment of error-prone genomic maps by combinatorial indexing and technology-agnostic statistical analysis. GigaScience, 5(1). https://doi.org/10.1186/s13742-016-0110-0
Comparing, Ranking, and Filtering Motifs with Character Classes: Application to Biological Sequences Analysis
Biological Knowledge Discovery Handbook / Dec 16, 2013
Comin, M., & Verzotto, D. (2013). Comparing, Ranking, and Filtering Motifs with Character Classes: Application to Biological Sequences Analysis. Biological Knowledge Discovery Handbook, 307–332. Portico. https://doi.org/10.1002/9781118617151.ch13
Index-based map-to-sequence alignment in large eukaryotic genomes
Mar 27, 2015
Verzotto, D., Hillmer, A. M., Teo, A. S. M., & Nagarajan, N. (2015). Index-based map-to-sequence alignment in large eukaryotic genomes. https://doi.org/10.1101/017194
String Processing and Information Retrieval
Lecture Notes in Computer Science / Jan 01, 2018
Gagie, T., Moffat, A., Navarro, G., & Cuadros-Vargas, E. (Eds.). (2018). String Processing and Information Retrieval. Lecture Notes in Computer Science. https://doi.org/10.1007/978-3-030-00479-8
String Processing and Information Retrieval
Lecture Notes in Computer Science / Jan 01, 2010
Chavez, E., & Lonardi, S. (Eds.). (2010). String Processing and Information Retrieval. Lecture Notes in Computer Science. https://doi.org/10.1007/978-3-642-16321-0
Alignment‐Free Measures for Whole‐Genome Comparison
Pattern Recognition in Computational Molecular Biology / Nov 19, 2015
Comin, M., & Verzotto, D. (2015). Alignment‐Free Measures for Whole‐Genome Comparison. Pattern Recognition in Computational Molecular Biology, 43–64. Portico. https://doi.org/10.1002/9781119078845.ch3
Bioinformatics Research and Applications
Lecture Notes in Computer Science / Jan 01, 2012
Bleris, L., Măndoiu, I., Schwartz, R., & Wang, J. (Eds.). (2012). Bioinformatics Research and Applications. Lecture Notes in Computer Science. https://doi.org/10.1007/978-3-642-30191-9
Proceedings Seventh International Symposium on String Processing and Information Retrieval. SPIRE 2000
Proceedings Seventh International Symposium on String Processing and Information Retrieval. SPIRE 2000 / Jan 01, 2000
Proceedings Seventh International Symposium on String Processing and Information Retrieval. SPIRE 2000. (2000). Proceedings Seventh International Symposium on String Processing and Information Retrieval. SPIRE 2000. https://doi.org/10.1109/spire.2000.878173
Big Data Knowledge Service Framework based on Knowledge Fusion
Proceedings of the 8th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management / Jan 01, 2016
Wang, F., Fan, H., & Liu, G. (2016). Big Data Knowledge Service Framework based on Knowledge Fusion. Proceedings of the 8th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management. https://doi.org/10.5220/0006036301160123
Algorithms meet sequencing technologies – 10th edition of the RECOMB-Seq workshop
iScience / Jan 01, 2021
Patro, R., & Salmela, L. (2021). Algorithms meet sequencing technologies – 10th edition of the RECOMB-Seq workshop. IScience, 24(1), 101956. https://doi.org/10.1016/j.isci.2020.101956
BIOKDD 2015 Workshop Committee
2015 26th International Workshop on Database and Expert Systems Applications (DEXA) / Sep 01, 2015
BIOKDD 2015 Workshop Committee. (2015). 2015 26th International Workshop on Database and Expert Systems Applications (DEXA). https://doi.org/10.1109/dexa.2015.8
2014 Index IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 11
IEEE/ACM Transactions on Computational Biology and Bioinformatics / Nov 01, 2014
2014 Index IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 11. (2014). IEEE/ACM Transactions on Computational Biology and Bioinformatics, 11(6), 1273–1292. https://doi.org/10.1109/tcbb.2014.2381091
Guest editorial for the 12th Asia Pacific Bioinformatics Conference
IEEE/ACM Transactions on Computational Biology and Bioinformatics / Jul 01, 2014
Zhou, S., & Phoebe Chen, Y.-P. (2014). Guest editorial for the 12th Asia Pacific Bioinformatics Conference. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 11(4), 614–615. https://doi.org/10.1109/tcbb.2014.2327487
Editorial: Special Issue on Algorithms for Sequence Analysis and Storage
Algorithms / Mar 25, 2014
Mäkinen, V. (2014). Editorial: Special Issue on Algorithms for Sequence Analysis and Storage. Algorithms, 7(1), 186–187. https://doi.org/10.3390/a7010186
Reducing the Space of Degenerate Patterns in Protein Remote Homology Detection
2013 24th International Workshop on Database and Expert Systems Applications / Aug 01, 2013
Comin, M., & Verzotto, D. (2013). Reducing the Space of Degenerate Patterns in Protein Remote Homology Detection. 2013 24th International Workshop on Database and Expert Systems Applications. https://doi.org/10.1109/dexa.2013.36
Reducing the Space of Degenerate Patterns in Protein Remote Homology Detection
2013 24th International Workshop on Database and Expert Systems Applications / Aug 01, 2013
Comin, M., & Verzotto, D. (2013). Reducing the Space of Degenerate Patterns in Protein Remote Homology Detection. 2013 24th International Workshop on Database and Expert Systems Applications. https://doi.org/10.1109/dexa.2013.36
Telexistence
Lecture Notes in Computer Science / Jan 01, 2015
Tachi, S. (2015). Telexistence. Virtual Realities, 229–259. https://doi.org/10.1007/978-3-319-17043-5_13
ISSASim 2013 Preface
2013 24th International Workshop on Database and Expert Systems Applications / Aug 01, 2013
ISSASim 2013 Preface. (2013). 2013 24th International Workshop on Database and Expert Systems Applications. https://doi.org/10.1109/dexa.2013.54
Research and Implementation of Massive Health Care Data Management and Analysis Based on Hadoop
2012 Fourth International Conference on Computational and Information Sciences / Aug 01, 2012
Yu, H., & Wang, D. (2012). Research and Implementation of Massive Health Care Data Management and Analysis Based on Hadoop. 2012 Fourth International Conference on Computational and Information Sciences. https://doi.org/10.1109/iccis.2012.225
Scattered-Data-Verfahren
Dagstuhl Seminar 1997 / Jan 01, 1999
Toelke, J. (1999). Scattered-Data-Verfahren. Dagstuhl Seminar 1997, 121–133. https://doi.org/10.1007/978-3-322-89938-5_6
Computation and Incentives of Competitive Equilibria in a Matching Market
Algorithmic Game Theory / Jan 01, 2011
Chen, N., & Deng, X. (2011). Computation and Incentives of Competitive Equilibria in a Matching Market. Lecture Notes in Computer Science, 2–6. https://doi.org/10.1007/978-3-642-24829-0_2
[Virtual + 1] * Reality
Virtual Realities / Oct 26, 2010
Beckhaus, S. (2010). [Virtual + 1] * Reality. Virtual Realities, 77–96. https://doi.org/10.1007/978-3-211-99178-7_5
Combinatorial Pattern Matching
Lecture Notes in Computer Science / Jan 01, 2010
Amir, A., & Parida, L. (Eds.). (2010). Combinatorial Pattern Matching. Lecture Notes in Computer Science. https://doi.org/10.1007/978-3-642-13509-5
Performance Evaluation for Question Classification by Tree Kernels using Support Vector Machines
Journal of Computers / Jan 01, 2010
Rahman, M. A. (2010). Performance Evaluation for Question Classification by Tree Kernels using Support Vector Machines. Journal of Computers, 5(1). https://doi.org/10.4304/jcp.5.1.32-39
How Context and Semantic Information Can Help a Machine Learning System?
MICAI 2007: Advances in Artificial Intelligence
Vázquez, S., Kozareva, Z., & Montoyo, A. (n.d.). How Context and Semantic Information Can Help a Machine Learning System? Lecture Notes in Computer Science, 996–1003. https://doi.org/10.1007/978-3-540-76631-5_95
Appendix Computer Analysis
Earthquake Engineering / Dec 20, 2006
Appendix Computer Analysis. (2006). Earthquake Engineering, 371–422. Portico. https://doi.org/10.1002/9780470168042.app1
Theoretical and Practical Analyses in Metagenomic Sequence Classification
Communications in Computer and Information Science / Jan 01, 2019
Amraoui, H., Elloumi, M., Marcelloni, F., Mhamdi, F., & Verzotto, D. (2019). Theoretical and Practical Analyses in Metagenomic Sequence Classification. Database and Expert Systems Applications, 27–37. https://doi.org/10.1007/978-3-030-27684-3_5
The Colored Longest Common Prefix Array Computed via Sequential Scans
String Processing and Information Retrieval / Jan 01, 2018
Garofalo, F., Rosone, G., Sciortino, M., & Verzotto, D. (2018). The Colored Longest Common Prefix Array Computed via Sequential Scans. Lecture Notes in Computer Science, 153–167. https://doi.org/10.1007/978-3-030-00479-8_13
Single-molecule optical genome mapping of a human HapMap and a colorectal cancer cell line
GigaScience / Dec 01, 2015
Teo, A. S. M., Verzotto, D., Yao, F., Nagarajan, N., & Hillmer, A. M. (2015). Single-molecule optical genome mapping of a human HapMap and a colorectal cancer cell line. GigaScience, 4(1). https://doi.org/10.1186/s13742-015-0106-1
Filtering Degenerate Patterns with Application to Protein Sequence Analysis
Algorithms / May 22, 2013
Comin, M., & Verzotto, D. (2013). Filtering Degenerate Patterns with Application to Protein Sequence Analysis. Algorithms, 6(2), 352–370. https://doi.org/10.3390/a6020352
Education
University of Padua
Ph.D., Computer Science & Engineering / April, 2012
Experience
Centre for Higher Defence Studies (CASD) - School of Advanced Studies, Italian Defence General Staff
Assistant Professor of Computer Science / December, 2022 — Present
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