Thomas Bitterman, Ph.D.

Senior Lecturer, Maastricht University

Research Interests

AI
machine learning
Software
Computer Networks and Communications
Computer Science Applications
Applied Mathematics
Biochemistry
Molecular Biology
Structural Biology
Ecology, Evolution, Behavior and Systematics
Molecular Medicine
Genetics
Biotechnology

Publications

Simulation as a service (SMaaS): a cloud-based framework to support the educational use of scientific software

International Journal of Cloud Computing / Jan 01, 2014

Bitterman, T., Calyam, P., Berryman, A., Hudak, D. E., Li, n, Chalker, A., Gordon, S., Zhang, D., Cai, D., Lee, C., & Ramnath, R. (2014). Simulation as a service (SMaaS): a cloud-based framework to support the educational use of scientific software. International Journal of Cloud Computing, 3(2), 177. https://doi.org/10.1504/ijcc.2014.062272

WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures

BMC Bioinformatics / Dec 01, 2010

Lichtenberg, J., Kurz, K., Liang, X., Al-ouran, R., Neiman, L., Nau, L. J., Welch, J. D., Jacox, E., Bitterman, T., Ecker, K., Elnitski, L., Drews, F., Lee, S. S., & Welch, L. R. (2010). WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures. BMC Bioinformatics, 11(S12). https://doi.org/10.1186/1471-2105-11-s12-s6

OSC OnDemand

Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery / Jul 22, 2013

Hudak, D. E., Bitterman, T., Carey, P., Johnson, D., Franz, E., Brady, S., & Diwan, P. (2013, July 22). OSC OnDemand: a web platform integrating access to HPC systems, web and VNC applications. Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery. https://doi.org/10.1145/2484762.2484780

Genetic Algorithms and the Satisfiability of Large-Scale Boolean Expressions.

Bitterman, T. (n.d.). Genetic Algorithms and the Satisfiability of Large-Scale Boolean Expressions. [Louisiana State University Libraries]. https://doi.org/10.31390/gradschool_disstheses.5560

Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service

Cladistics / May 21, 2012

Janies, D. A., Pomeroy, L. W., Aaronson, J. M., Handelman, S., Hardman, J., Kawalec, K., Bitterman, T., & Wheeler, W. C. (2012). Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service. Cladistics, 28(5), 483–488. Portico. https://doi.org/10.1111/j.1096-0031.2012.00401.x

Applying software product line engineering in building web portals for supercomputing services

Proceedings of the 28th Annual ACM Symposium on Applied Computing / Mar 18, 2013

Diwan, P., Carey, P., Franz, E., Li, Y., Bitterman, T., Hudak, D. E., & Ramnath, R. (2013, March 18). Applying software product line engineering in building web portals for supercomputing services. Proceedings of the 28th Annual ACM Symposium on Applied Computing. https://doi.org/10.1145/2480362.2480694

Varney, Sir David (Robert), (born 11 May 1946), Chairman, Packt Ltd, since 2012

Who's Who / Dec 01, 2007

Varney, Sir David (Robert), (born 11 May 1946), Chairman, Packt Ltd, since 2012. (2007). In Who’s Who. Oxford University Press. https://doi.org/10.1093/ww/9780199540884.013.u41004

Enabling Data-Intensive Biomedical Science: Gaps, Opportunities, and Challenges

OMICS: A Journal of Integrative Biology / Apr 01, 2011

Hudak, D. E., Stredney, D., Calyam, P., Wohlever, K., Bitterman, T., Hittle, B., Kerwin, T., & Krishnamurthy, A. (2011). Enabling Data-Intensive Biomedical Science: Gaps, Opportunities, and Challenges. OMICS: A Journal of Integrative Biology, 15(4), 231–233. https://doi.org/10.1089/omi.2011.0017

Encyclopedias of DNA Elements for Plant Genomes

Advances in Genomic Sequence Analysis and Pattern Discovery / Jan 01, 2011

Lichtenberg, J., Yilmaz, A., Kurz, K., Liang, X., Nelson, C., Bitterman, T., Stockinger, E., Grotewold, E., & Welch, L. R. (2011). Encyclopedias of DNA Elements for Plant Genomes. In Science, Engineering, and Biology Informatics (pp. 159–178). WORLD SCIENTIFIC. https://doi.org/10.1142/9789814327732_0007

Offering Simulation Services Using a Hybrid Cloud/HPC Architecture

Simulation for Cyber-Physical Systems Engineering / Jan 01, 2020

Bitterman, T. (2020). Offering Simulation Services Using a Hybrid Cloud/HPC Architecture. In Simulation Foundations, Methods and Applications (pp. 259–282). Springer International Publishing. https://doi.org/10.1007/978-3-030-51909-4_10

Construction of Genomic Regulatory Encyclopedias: Strategies and Case Studies

2009 Ohio Collaborative Conference on Bioinformatics / Jun 01, 2009

Lichtenberg, J., Alam, M., Bitterman, T., Drews, F., Ecker, K., Elnitski, L., Evans, S., Geisler, M., Grotewold, E., Gu, D., Jacox, E., Kurz, K., Lee, S. S., Liang, X., Majmudar, P. M., Morris, P., Nelson, C., Stockinger, E., Welch, J. D., … Welch, L. R. (2009, June). Construction of Genomic Regulatory Encyclopedias: Strategies and Case Studies. 2009 Ohio Collaborative Conference on Bioinformatics. https://doi.org/10.1109/occbio.2009.9

<title>Alternative method for the connectionist learning of k-DNF expressions</title>

SPIE Proceedings / Jul 01, 1992

Bitterman, T. (1992). &lt;title&gt;Alternative method for the connectionist learning of k-DNF expressions&lt;/title&gt; In D. W. Ruck (Ed.), Science of Artificial Neural Networks. SPIE. https://doi.org/10.1117/12.140102

<title>Alternative method for the connectionist learning of k-DNF expressions</title>

SPIE Proceedings / Jul 01, 1992

Bitterman, T. (1992). &lt;title&gt;Alternative method for the connectionist learning of k-DNF expressions&lt;/title&gt; In D. W. Ruck (Ed.), Science of Artificial Neural Networks. SPIE. https://doi.org/10.1117/12.140102

Education

Louisiana State University

Ph.D., Computer Science / August, 1993

Baton Rouge, Louisiana, United States of America

Kent State University

B.S.

Kent, Ohio, United States of America

Experience

Maastricht University

Senior Lecturer / February, 2023Present

Riverside Research

Machine Learning Engineer / August, 2020December, 2023

Wittenberg University

Assistant Professor / August, 2014August, 2020

Nationwide Insurance

Architect / January, 2014July, 2014

Ohio Supercomputer Center

Senior Software Engineer / February, 2008January, 2014

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