Nature / May 16, 2012

(2012). Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature, 487(7405), 94–98. https://doi.org/10.1038/nature11041

Nature / Aug 14, 2011

Joron, M., Frezal, L., Jones, R. T., Chamberlain, N. L., Lee, S. F., Haag, C. R., Whibley, A., Becuwe, M., Baxter, S. W., Ferguson, L., Wilkinson, P. A., Salazar, C., Davidson, C., Clark, R., Quail, M. A., Beasley, H., Glithero, R., Lloyd, C., Sims, S., … ffrench-Constant, R. H. (2011). Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry. Nature, 477(7363), 203–206. https://doi.org/10.1038/nature10341

Philosophical Transactions of the Royal Society B: Biological Sciences / Feb 05, 2012

Nadeau, N. J., Whibley, A., Jones, R. T., Davey, J. W., Dasmahapatra, K. K., Baxter, S. W., Quail, M. A., Joron, M., ffrench-Constant, R. H., Blaxter, M. L., Mallet, J., & Jiggins, C. D. (2012). Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing. Philosophical Transactions of the Royal Society B: Biological Sciences, 367(1587), 343–353. https://doi.org/10.1098/rstb.2011.0198

The American Journal of Human Genetics / Apr 01, 2008

Gilfillan, G. D., Selmer, K. K., Roxrud, I., Smith, R., Kyllerman, M., Eiklid, K., Kroken, M., Mattingsdal, M., Egeland, T., Stenmark, H., Sjøholm, H., Server, A., Samuelsson, L., Christianson, A., Tarpey, P., Whibley, A., Stratton, M. R., Futreal, P. A., Teague, J., … Strømme, P. (2008). SLC9A6 Mutations Cause X-Linked Mental Retardation, Microcephaly, Epilepsy, and Ataxia, a Phenotype Mimicking Angelman Syndrome. The American Journal of Human Genetics, 82(4), 1003–1010. https://doi.org/10.1016/j.ajhg.2008.01.013

Science Translational Medicine / Sep 15, 2010

Noor, A., Whibley, A., Marshall, C. R., Gianakopoulos, P. J., Piton, A., Carson, A. R., Orlic-Milacic, M., Lionel, A. C., Sato, D., Pinto, D., Drmic, I., Noakes, C., Senman, L., Zhang, X., Mo, R., Gauthier, J., Crosbie, J., Pagnamenta, A. T., … Munson, J. (2010). Disruption at the PTCHD1 Locus on Xp22.11 in Autism Spectrum Disorder and Intellectual Disability. Science Translational Medicine, 2(49). https://doi.org/10.1126/scitranslmed.3001267

The American Journal of Human Genetics / Feb 01, 2008

Froyen, G., Corbett, M., Vandewalle, J., Jarvela, I., Lawrence, O., Meldrum, C., Bauters, M., Govaerts, K., Vandeleur, L., Van Esch, H., Chelly, J., Sanlaville, D., van Bokhoven, H., Ropers, H.-H., Laumonnier, F., Ranieri, E., Schwartz, C. E., Abidi, F., Tarpey, P. S., … Gécz, J. (2008). Submicroscopic Duplications of the Hydroxysteroid Dehydrogenase HSD17B10 and the E3 Ubiquitin Ligase HUWE1 Are Associated with Mental Retardation. The American Journal of Human Genetics, 82(2), 432–443. https://doi.org/10.1016/j.ajhg.2007.11.002

Nature / Jun 01, 2016

Nadeau, N. J., Pardo-Diaz, C., Whibley, A., Supple, M. A., Saenko, S. V., Wallbank, R. W. R., Wu, G. C., Maroja, L., Ferguson, L., Hanly, J. J., Hines, H., Salazar, C., Merrill, R. M., Dowling, A. J., ffrench-Constant, R. H., Llaurens, V., Joron, M., McMillan, W. O., & Jiggins, C. D. (2016). The gene cortex controls mimicry and crypsis in butterflies and moths. Nature, 534(7605), 106–110. https://doi.org/10.1038/nature17961

Science / Aug 18, 2006

Whibley, A. C., Langlade, N. B., Andalo, C., Hanna, A. I., Bangham, A., Thébaud, C., & Coen, E. (2006). Evolutionary Paths Underlying Flower Color Variation in Antirrhinum. Science, 313(5789), 963–966. https://doi.org/10.1126/science.1129161

The American Journal of Human Genetics / Aug 01, 2010

Whibley, A. C., Plagnol, V., Tarpey, P. S., Abidi, F., Fullston, T., Choma, M. K., Boucher, C. A., Shepherd, L., Willatt, L., Parkin, G., Smith, R., Futreal, P. A., Shaw, M., Boyle, J., Licata, A., Skinner, C., Stevenson, R. E., Turner, G., Field, M., … Raymond, F. L. (2010). Fine-Scale Survey of X Chromosome Copy Number Variants and Indels Underlying Intellectual Disability. The American Journal of Human Genetics, 87(2), 173–188. https://doi.org/10.1016/j.ajhg.2010.06.017

Molecular Ecology / Mar 06, 2017

Llaurens, V., Whibley, A., & Joron, M. (2017). Genetic architecture and balancing selection: the life and death of differentiated variants. Molecular Ecology, 26(9), 2430–2448. Portico. https://doi.org/10.1111/mec.14051

Current Biology / Jun 01, 2018

Jay, P., Whibley, A., Frézal, L., Rodríguez de Cara, M. Á., Nowell, R. W., Mallet, J., Dasmahapatra, K. K., & Joron, M. (2018). Supergene Evolution Triggered by the Introgression of a Chromosomal Inversion. Current Biology, 28(11), 1839-1845.e3. https://doi.org/10.1016/j.cub.2018.04.072

European Journal of Human Genetics / Dec 23, 2009

Hackett, A., Tarpey, P. S., Licata, A., Cox, J., Whibley, A., Boyle, J., Rogers, C., Grigg, J., Partington, M., Stevenson, R. E., Tolmie, J., Yates, J. R., Turner, G., Wilson, M., Futreal, A. P., Corbett, M., Shaw, M., Gecz, J., Raymond, F. L., … Abidi, F. E. (2009). CASK mutations are frequent in males and cause X-linked nystagmus and variable XLMR phenotypes. European Journal of Human Genetics, 18(5), 544–552. https://doi.org/10.1038/ejhg.2009.220

Nature Genetics / Jan 25, 2021

Jay, P., Chouteau, M., Whibley, A., Bastide, H., Parrinello, H., Llaurens, V., & Joron, M. (2021). Mutation load at a mimicry supergene sheds new light on the evolution of inversion polymorphisms. Nature Genetics, 53(3), 288–293. https://doi.org/10.1038/s41588-020-00771-1

Nature Plants / Jan 28, 2019

Li, M., Zhang, D., Gao, Q., Luo, Y., Zhang, H., Ma, B., Chen, C., Whibley, A., Zhang, Y., Cao, Y., Li, Q., Guo, H., Li, J., Song, Y., Zhang, Y., Copsey, L., Li, Y., Li, X., Qi, M., … Xue, Y. (2019). Genome structure and evolution of Antirrhinum majus L. Nature Plants, 5(2), 174–183. https://doi.org/10.1038/s41477-018-0349-9

Nature Communications / Nov 27, 2014

Le Poul, Y., Whibley, A., Chouteau, M., Prunier, F., Llaurens, V., & Joron, M. (2014). Evolution of dominance mechanisms at a butterfly mimicry supergene. Nature Communications, 5(1). https://doi.org/10.1038/ncomms6644

Human Molecular Genetics / Jan 11, 2010

Kerzendorfer, C., Whibley, A., Carpenter, G., Outwin, E., Chiang, S.-C., Turner, G., Schwartz, C., El-Khamisy, S., Raymond, F. L., & O’Driscoll, M. (2010). Mutations in Cullin 4B result in a human syndrome associated with increased camptothecin-induced topoisomerase I-dependent DNA breaks. Human Molecular Genetics, 19(7), 1324–1334. https://doi.org/10.1093/hmg/ddq008

Proceedings of the National Academy of Sciences / Oct 08, 2018

Tavares, H., Whibley, A., Field, D. L., Bradley, D., Couchman, M., Copsey, L., Elleouet, J., Burrus, M., Andalo, C., Li, M., Li, Q., Xue, Y., Rebocho, A. B., Barton, N. H., & Coen, E. (2018). Selection and gene flow shape genomic islands that control floral guides. Proceedings of the National Academy of Sciences, 115(43), 11006–11011. https://doi.org/10.1073/pnas.1801832115

Heredity / Mar 25, 2015

Huber, B., Whibley, A., Poul, Y. L., Navarro, N., Martin, A., Baxter, S., Shah, A., Gilles, B., Wirth, T., McMillan, W. O., & Joron, M. (2015). Conservatism and novelty in the genetic architecture of adaptation in Heliconius butterflies. Heredity, 114(5), 515–524. https://doi.org/10.1038/hdy.2015.22

European Journal of Human Genetics / May 19, 2010

Whibley, A., Urquhart, J., Dore, J., Willatt, L., Parkin, G., Gaunt, L., Black, G., Donnai, D., & Raymond, F. L. (2010). Deletion of MAOA and MAOB in a male patient causes severe developmental delay, intermittent hypotonia and stereotypical hand movements. European Journal of Human Genetics, 18(10), 1095–1099. https://doi.org/10.1038/ejhg.2010.41

Science / Nov 17, 2017

Bradley, D., Xu, P., Mohorianu, I.-I., Whibley, A., Field, D., Tavares, H., Couchman, M., Copsey, L., Carpenter, R., Li, M., Li, Q., Xue, Y., Dalmay, T., & Coen, E. (2017). Evolution of flower color pattern through selection on regulatory small RNAs. Science, 358(6365), 925–928. https://doi.org/10.1126/science.aao3526

Heredity / Oct 01, 2014

Gouin, A., Legeai, F., Nouhaud, P., Whibley, A., Simon, J.-C., & Lemaitre, C. (2014). Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads. Heredity, 114(5), 494–501. https://doi.org/10.1038/hdy.2014.85

Molecular Ecology Resources / Jan 20, 2021

Whibley, A., Kelley, J. L., & Narum, S. R. (2021). The changing face of genome assemblies: Guidance on achieving high‐quality reference genomes. Molecular Ecology Resources, 21(3), 641–652. Portico. https://doi.org/10.1111/1755-0998.13312

Human Molecular Genetics / Apr 15, 2009

Raymond, F. L., Whibley, A., Stratton, M. R., & Gecz, J. (2009). Lessons learnt from large-scale exon re-sequencing of the X chromosome. Human Molecular Genetics, 18(R1), R60–R64. https://doi.org/10.1093/hmg/ddp071

Evolution / Apr 24, 2013

Jones, R. T., Poul, Y. L., Whibley, A. C., Mérot, C., ffrench-Constant, R. H., & Joron, M. (2013). WING SHAPE VARIATION ASSOCIATED WITH MIMICRY IN BUTTERFLIES. Evolution, 67(8), 2323–2334. https://doi.org/10.1111/evo.12114

Aug 15, 2019

Jay, P., Chouteau, M., Whibley, A., Bastide, H., Llaurens, V., Parrinello, H., & Joron, M. (2019). Mutation accumulation in chromosomal inversions maintains wing pattern polymorphism in a butterfly. https://doi.org/10.1101/736504

Molecular Ecology / Jul 26, 2021

Duntsch, L., Whibley, A., Brekke, P., Ewen, J. G., & Santure, A. W. (2021). Genomic data of different resolutions reveal consistent inbreeding estimates but contrasting homozygosity landscapes for the threatened Aotearoa New Zealand hihi. Molecular Ecology, 30(23), 6006–6020. Portico. https://doi.org/10.1111/mec.16068

Molecular Ecology / Nov 06, 2020

Marden, E., Abbott, R. J., Austerlitz, F., Ortiz‐Barrientos, D., Baucom, R. S., Bongaerts, P., Bonin, A., Bonneaud, C., Browne, L., Alex Buerkle, C., Caicedo, A. L., Coltman, D. W., Cruzan, M. B., Davison, A., DeWoody, J. A., Dumbrell, A. J., Emerson, B. C., Fountain‐Jones, N. M., Gillespie, R., … Rieseberg, L. H. (2020). Sharing and reporting benefits from biodiversity research. Molecular Ecology, 30(5), 1103–1107. Portico. https://doi.org/10.1111/mec.15702

Philosophical Transactions of the Royal Society B: Biological Sciences / Jun 13, 2022

Jay, P., Leroy, M., Le Poul, Y., Whibley, A., Arias, M., Chouteau, M., & Joron, M. (2022). Association mapping of colour variation in a butterfly provides evidence that a supergene locks together a cluster of adaptive loci. Philosophical Transactions of the Royal Society B: Biological Sciences, 377(1856). https://doi.org/10.1098/rstb.2021.0193

Journal of Insect Science / Jan 01, 2016

Piron Prunier, F., Chouteau, M., Whibley, A., Joron, M., & Llaurens, V. (2016). Selection of Valid Reference Genes for Reverse Transcription Quantitative PCR Analysis inHeliconius numata(Lepidoptera: Nymphalidae). Journal of Insect Science, 16(1), 50. https://doi.org/10.1093/jisesa/iew034

Molecular Ecology / Apr 01, 2020

Gauthier, J., de Silva, D. L., Gompert, Z., Whibley, A., Houssin, C., Le Poul, Y., McClure, M., Lemaitre, C., Legeai, F., Mallet, J., & Elias, M. (2020). Contrasting genomic and phenotypic outcomes of hybridization between pairs of mimetic butterfly taxa across a suture zone. Molecular Ecology, 29(7), 1328–1343. Portico. https://doi.org/10.1111/mec.15403

American Journal of Medical Genetics Part A / Mar 01, 2010

Lugtenberg, D., Zangrande-Vieira, L., Kirchhoff, M., Whibley, A. C., Oudakker, A. R., Kjaergaard, S., Vianna-Morgante, A. M., Kleefstra, T., Ruiter, M., Jehee, F. S., Ullmann, R., Schwartz, C. E., Stratton, M., Raymond, F. L., Veltman, J. A., Vrijenhoek, T., Pfundt, R., Schuurs-Hoeijmakers, J. H. M., Hehir-Kwa, J. Y., … de Brouwer, A. P. M. (2010). Recurrent deletion ofZNF630at Xp11.23 is not associated with mental retardation. American Journal of Medical Genetics Part A, 152A(3), 638–645. https://doi.org/10.1002/ajmg.a.33292

Molecular Ecology Resources / Aug 07, 2021

Lee, K. D., Millar, C. D., Brekke, P., Whibley, A., Ewen, J. G., Hingston, M., Zhu, A., & Santure, A. W. (2021). The design and application of a 50 K SNP chip for a threatened Aotearoa New Zealand passerine, the hihi. Molecular Ecology Resources, 22(1), 415–429. Portico. https://doi.org/10.1111/1755-0998.13480

Molecular Ecology / Feb 05, 2023

Duntsch, L., Whibley, A., de Villemereuil, P., Brekke, P., Bailey, S., Ewen, J. G., & Santure, A. W. (2023). Genomic signatures of inbreeding depression for a threatened Aotearoa New Zealand passerine. Molecular Ecology, 32(8), 1893–1907. Portico. https://doi.org/10.1111/mec.16855

Entomological Science / Jan 23, 2015

Chouteau, M., Whibley, A., Angers, B., & Joron, M. (2015). Development of microsatellite loci from a reference genome for the Neotropical butterflyHeliconius numataand its close relatives. Entomological Science, 18(2), 283–287. https://doi.org/10.1111/ens.12121

Mar 05, 2015

Nadeau, N., Pardo-Diaz, C., Whibley, A., Supple, M. A., Wallbank, R., Wu, G. C., Maroja, L., Ferguson, L., Hines, H., Salazar, C., ffrench-Constant, R., Joron, M., McMillan, W. O., & Jiggins, C. (2015). The origins of a novel butterfly wing patterning gene from within a family of conserved cell cycle regulators. https://doi.org/10.1101/016006

Science / Jun 23, 2023

Kelly-Bellow, R., Lee, K., Kennaway, R., Barclay, J. E., Whibley, A., Bushell, C., Spooner, J., Yu, M., Brett, P., Kular, B., Cheng, S., Chu, J., Xu, T., Lane, B., Fitzsimons, J., Xue, Y., Smith, R. S., Whitewoods, C. D., & Coen, E. (2023). Brassinosteroid coordinates cell layer interactions in plants via cell wall and tissue mechanics. Science, 380(6651), 1275–1281. https://doi.org/10.1126/science.adf0752

New Zealand Journal of Zoology / Mar 12, 2023

Beesley, A., Whibley, A., Santure, A. W., & Battles, H. T. (2023). The introduction and distribution history of the common myna (Acridotheres tristis) in New Zealand. New Zealand Journal of Zoology, 1–13. https://doi.org/10.1080/03014223.2023.2182332

Oct 01, 2021

Rodríguez de Cara, M. Á., Jay, P., Rougemont, Q., Chouteau, M., Whibley, A., Huber, B., Piron-Prunier, F., Ramos, R. R., Freitas, A. V. L., Salazar, C., Silva-Brandão, K. L., Torres, T. T., & Joron, M. (2021). Balancing selection at a wing pattern locus is associated with major shifts in genome-wide patterns of diversity and gene flow. https://doi.org/10.1101/2021.09.29.462348

Molecular Ecology Resources / Jun 18, 2023

Bailey, S., Guhlin, J., Senanayake, D. S., Scherer, P., Brekke, P., Ewen, J. G., Santure, A. W., & Whibley, A. (2023). Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics. Molecular Ecology Resources. Portico. https://doi.org/10.1111/1755-0998.13823

Heredity / May 17, 2023

Atsawawaranunt, K., Ewart, K. M., Major, R. E., Johnson, R. N., Santure, A. W., & Whibley, A. (2023). Tracing the introduction of the invasive common myna using population genomics. Heredity, 131(1), 56–67. https://doi.org/10.1038/s41437-023-00621-w

The Plant Journal / Oct 17, 2022

Jaudal, M., Mayo‐Smith, M., Poulet, A., Whibley, A., Peng, Y., Zhang, L., Thomson, G., Trimborn, L., Jacob, Y., van Wolfswinkel, J. C., Goldstone, D. C., Wen, J., Mysore, K. S., & Putterill, J. (2022). <scp>MtING2</scp> encodes an <scp>ING</scp> domain <scp>PHD</scp> finger protein which affects Medicago growth, flowering, global patterns of <scp>H3K4me3</scp>, and gene expression. The Plant Journal, 112(4), 1029–1050. Portico. https://doi.org/10.1111/tpj.15994

Science / Jan 26, 2007

Rausher, M. D. (2007). Comment on "Evolutionary Paths Underlying Flower Color Variation in Antirrhinum ". Science, 315(5811), 461–461. https://doi.org/10.1126/science.1136073

Peer Community Journal / Jul 28, 2023

Rodríguez de Cara, M. Á., Jay, P., Rougemont, Q., Chouteau, M., Whibley, A., Huber, B., Piron-Prunier, F., Ramos, R. R., Freitas, A. V. L., Salazar, C., Silva-Brandão, K. L., Torres, T. T., & Joron, M. (2023). Balancing selection at a wing pattern locus is associated with major shifts in genome-wide patterns of diversity and gene flow. Peer Community Journal, 3. https://doi.org/10.24072/pcjournal.298

Molecular Biology and Evolution / Jul 01, 2023

Rougemont, Q., Huber, B., Martin, S. H., Whibley, A., Estrada, C., Solano, D., Orpet, R., McMillan, W. O., Frérot, B., & Joron, M. (2023). Subtle Introgression Footprints at the End of the Speciation Continuum in a Clade of Heliconius Butterflies. Molecular Biology and Evolution, 40(7). https://doi.org/10.1093/molbev/msad166

Molecular Ecology Resources / Jan 27, 2023

Gauthier, J., Meier, J., Legeai, F., McClure, M., Whibley, A., Bretaudeau, A., Boulain, H., Parrinello, H., Mugford, S. T., Durbin, R., Zhou, C., McCarthy, S., Wheat, C. W., Piron‐Prunier, F., Monsempes, C., François, M., Jay, P., Noûs, C., Persyn, E., … Elias, M. (2023). First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies. Molecular Ecology Resources, 23(4), 872–885. Portico. https://doi.org/10.1111/1755-0998.13749

Aug 23, 2023

Stuart, K. C., Johnson, R. N., Major, R., Atsawawaranunt, K., Ewart, K. M., Rollins, L. A., Santure, A. W., & Whibley, A. (2023). The genome of a globally invasive passerine, the common myna (Acridotheres tristis). https://doi.org/10.1101/2023.08.22.554353

Feb 15, 2023

Kelly-Bellow, R., Lee, K., Kennaway, R., Barclay, E., Whibley, A., Bushell, C., Spooner, J., Yu, M., Brett, P., Kular, B., Cheng, S., Chu, J., Xu, T., Lane, B., Fitzsimons, J., Xue, Y., Smith, R., Whitewoods, C. D., & Coen, E. (2023). Genetic control of cell layer interactions in plants via tissue mechanics. https://doi.org/10.1101/2023.02.14.527838

Dec 17, 2021

Jay, P., Leroy, M., Le Poul, Y., Whibley, A., Arias, M., Chouteau, M., & Joron, M. (2021). Supergene formation: evidence for recombination suppression among multiple functional loci within inversions. https://doi.org/10.1101/2021.12.16.472922

Dec 17, 2021

Jay, P., Leroy, M., Le Poul, Y., Whibley, A., Arias, M., Chouteau, M., & Joron, M. (2021). Supergene formation: evidence for recombination suppression among multiple functional loci within inversions. https://doi.org/10.1101/2021.12.16.472922

Molecular Ecology Resources / Feb 22, 2021

Whibley, A. (2021). Genome insights give cause for optimism in the ongoing battle to save the vaquita. Molecular Ecology Resources, 21(4), 1005–1007. Portico. https://doi.org/10.1111/1755-0998.13345

Oct 15, 2018

Li, M., Zhang, D., Zhang, H., Gao, Q., Ma, B., Chen, C., Luo, Y., Cao, Y., Li, Q., Zhang, Y., Guo, H., Li, J., Song, Y., Zhang, Y., Copsey, L., Whibley, A., Li, Y., qi, M., Wang, J., … Xue, Y. (2018). Genome structure and evolution ofAntirrhnum majusL. https://doi.org/10.1101/443515

2016 International Congress of Entomology / Jan 01, 2016

Joron, M. (2016). The evolution and genomic consequences of adaptive inversion polymorphism in butterflies. 2016 International Congress of Entomology. https://doi.org/10.1603/ice.2016.94620

Heredity / Aug 18, 2010

Joron, M., & Whibley, A. (2010). Stripes, sex and sparrows: what processes underlie heteromorphic chromosome evolution? Heredity, 106(4), 531–532. https://doi.org/10.1038/hdy.2010.106

Genetics in Medicine / Sep 01, 2007

Lugtenberg, D., Veltman, J. A., & van Bokhoven, H. (2007). High-resolution genomic microarrays for X-linked mental retardation. Genetics in Medicine, 9(9), 560–565. https://doi.org/10.1097/gim.0b013e318149e647

Science / Jan 26, 2007

Whibley, A. C., Langlade, N. B., Andalo, C., Hanna, A. I., Bangham, A., Thébaud, C., & Coen, E. (2007). Response to Comment on "Evolutionary Paths Underlying Flower Color Variation in Antirrhinum ". Science, 315(5811), 461–461. https://doi.org/10.1126/science.1136394

Dec 14, 2017

Jay, P., Whibley, A., Frezal, L., de Cara, A., Nowell, R. W., Mallet, J., Dasmahapatra, K. K., & Joron, M. (2017). Supergene evolution triggered by the introgression of a chromosomal inversion. https://doi.org/10.1101/234559