Work with thought leaders and academic experts in microbiology

Companies can greatly benefit from working with experts in the field of Microbiology. These researchers bring a wealth of knowledge and skills that can contribute to various aspects of a company's operations. Here are some ways companies can collaborate with academic researchers in Microbiology: 1. Research and Development: Academic researchers can assist in conducting research and developing new products or technologies related to Microbiology. Their expertise can help companies stay at the forefront of scientific advancements. 2. Quality Control: Microbiology experts can ensure the quality and safety of products by conducting rigorous testing and analysis. They can help identify and mitigate potential risks associated with microbial contamination. 3. Disease Prevention and Control: Collaborating with Microbiology researchers can help companies develop strategies to prevent and control the spread of infectious diseases. This can be particularly valuable for industries such as healthcare, food production, and pharmaceuticals. 4. Environmental Impact Assessment: Microbiology researchers can assess the environmental impact of industrial processes and develop sustainable solutions. They can help companies minimize their ecological footprint and comply with environmental regulations. 5. Training and Education: Academic researchers can provide training and education programs to company employees, enhancing their understanding of Microbiology and its applications. This can improve overall efficiency and productivity within the organization.

Experts on NotedSource with backgrounds in microbiology include Michael W Harman, Jeffrey Townsend, Giuliana Noratto, Ariel Aptekmann, Peter Reich, Asst. Prof. Eng. Davide Verzotto, Ph.D., Brandon Reynante, Raymond Weil, Artemis Louyakis, Michael Paxhia, Dr. Susanne Ressl, Nicholas Medina, Gianfranco Santovito, Matheus Ferraz, Patrick G. Grant, Ph.D., Sally Irwin, Krti Tallam, Niko Popitsch, John Joe, Mark Schneegurt, Diane Imburgio, Melanie Ikeh, Paulo Zaini, Manohary Rajendram, and Diane Imburgio.

Michael W Harman

East Greenwich, RI, Rhode Island, United States of America
Distinguished Subject Matter Expert & Leader in Medical Technologies.
Most Relevant Research Interests
Microbiology
Other Research Interests (16)
Bacteria & Cell Bio-Physics
Biomechanics
Infectious Diseases
Immunology
Parasitology
And 11 more
About
Highly skilled, energetic, and motivated professional empowered by over a decade of cross-disciplinary engineering and scientific applications experience. Presenting elegant solutions to prevalent biomedical challenges. Motivated by driving deliverable outcomes from complex research studies through effective leadership, active consulting work, and innovative problem-solving techniques. Seeking to make an immediate impact in a fast-paced biotechnology environment capitalizing on my advanced comprehension, continued professional growth, strategic product development expertise, and active network of personal connections across all areas of science, engineering, medicine, manufacturing and healthcare.
Most Relevant Publications (1+)

15 total publications

The Hybrid Histidine Kinase Hk1 Is Part of a Two-Component System That Is Essential for Survival of Borrelia burgdorferi in Feeding Ixodes scapularis Ticks

Infection and Immunity / Aug 01, 2011

Caimano, M. J., Kenedy, M. R., Kairu, T., Desrosiers, D. C., Harman, M., Dunham-Ems, S., Akins, D. R., Pal, U., & Radolf, J. D. (2011). The Hybrid Histidine Kinase Hk1 Is Part of a Two-Component System That Is Essential for Survival of Borrelia burgdorferi in Feeding Ixodes scapularis Ticks. Infection and Immunity, 79(8), 3117–3130. https://doi.org/10.1128/iai.05136-11

Jeffrey Townsend

New Haven, CT
Professor of Biostatistics and Ecology & Evolutionary Biology
Most Relevant Research Interests
Microbiology
Other Research Interests (78)
Statistics
cancer genetics
disease modeling
antibiotic resistance
Evolutionary Genomics
And 73 more
About
Jeffrey Townsend is a Professor of Organismic and Evolutionary Biology at Yale University. He received his Ph.D. from Harvard University in 2002 and his Sc.B. from Brown University in 1994. He has been a teacher at St. Ann's School and an Assistant Professor at the University of Connecticut. He is currently the Elihu Professor of Biostatistics at Yale University.
Most Relevant Publications (26+)

207 total publications

Horizontal gene transfer, genome innovation and evolution

Nature Reviews Microbiology / Aug 01, 2005

Gogarten, J. P., & Townsend, J. P. (2005). Horizontal gene transfer, genome innovation and evolution. Nature Reviews Microbiology, 3(9), 679–687. https://doi.org/10.1038/nrmicro1204

The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study

The Lancet Microbe / Dec 01, 2021

Townsend, J. P., Hassler, H. B., Wang, Z., Miura, S., Singh, J., Kumar, S., Ruddle, N. H., Galvani, A. P., & Dornburg, A. (2021). The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study. The Lancet Microbe, 2(12), e666–e675. https://doi.org/10.1016/s2666-5247(21)00219-6

Secondary Metabolism Gene Clusters Exhibit Increasingly Dynamic and Differential Expression during Asexual Growth, Conidiation, and Sexual Development in Neurospora crassa

mSystems / Jun 28, 2022

Wang, Z., Lopez-Giraldez, F., Slot, J., Yarden, O., Trail, F., & Townsend, J. P. (2022). Secondary Metabolism Gene Clusters Exhibit Increasingly Dynamic and Differential Expression during Asexual Growth, Conidiation, and Sexual Development in Neurospora crassa. MSystems, 7(3). https://doi.org/10.1128/msystems.00232-22

Transcriptional Divergence Underpinning Sexual Development in the Fungal Class Sordariomycetes

mBio / Jun 28, 2022

Kim, W., Wang, Z., Kim, H., Pham, K., Tu, Y., Townsend, J. P., & Trail, F. (2022). Transcriptional Divergence Underpinning Sexual Development in the Fungal Class Sordariomycetes. MBio, 13(3). https://doi.org/10.1128/mbio.01100-22

Integrative Activity of Mating Loci, Environmentally Responsive Genes, and Secondary Metabolism Pathways during Sexual Development of Chaetomium globosum

mBio / Dec 24, 2019

Wang, Z., López-Giráldez, F., Wang, J., Trail, F., & Townsend, J. P. (2019). Integrative Activity of Mating Loci, Environmentally Responsive Genes, and Secondary Metabolism Pathways during Sexual Development of Chaetomium globosum. MBio, 10(6). https://doi.org/10.1128/mbio.02119-19

Modelling microbial infection to address global health challenges

Nature Microbiology / Sep 20, 2019

Fitzpatrick, M. C., Bauch, C. T., Townsend, J. P., & Galvani, A. P. (2019). Modelling microbial infection to address global health challenges. Nature Microbiology, 4(10), 1612–1619. https://doi.org/10.1038/s41564-019-0565-8

Comparative Genomics and Transcriptomics During Sexual Development Gives Insight Into the Life History of the Cosmopolitan Fungus Fusarium neocosmosporiellum

Frontiers in Microbiology / Jun 07, 2019

Kim, W., Cavinder, B., Proctor, R. H., O’Donnell, K., Townsend, J. P., & Trail, F. (2019). Comparative Genomics and Transcriptomics During Sexual Development Gives Insight Into the Life History of the Cosmopolitan Fungus Fusarium neocosmosporiellum. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.01247

Metabolism and Development during Conidial Germination in Response to a Carbon-Nitrogen-Rich Synthetic or a Natural Source of Nutrition in Neurospora crassa

mBio / Apr 30, 2019

Wang, Z., Miguel-Rojas, C., Lopez-Giraldez, F., Yarden, O., Trail, F., & Townsend, J. P. (2019). Metabolism and Development during Conidial Germination in Response to a Carbon-Nitrogen-Rich Synthetic or a Natural Source of Nutrition in Neurospora crassa. MBio, 10(2). https://doi.org/10.1128/mbio.00192-19

Using evolutionary genomics, transcriptomics, and systems biology to reveal gene networks underlying fungal development

Fungal Biology Reviews / Sep 01, 2018

Wang, Z., Gudibanda, A., Ugwuowo, U., Trail, F., & Townsend, J. P. (2018). Using evolutionary genomics, transcriptomics, and systems biology to reveal gene networks underlying fungal development. Fungal Biology Reviews, 32(4), 249–264. https://doi.org/10.1016/j.fbr.2018.02.001

Developmental Dynamics of Long Noncoding RNA Expression during Sexual Fruiting Body Formation in Fusarium graminearum

mBio / Sep 05, 2018

Kim, W., Miguel-Rojas, C., Wang, J., Townsend, J. P., & Trail, F. (2018). Developmental Dynamics of Long Noncoding RNA Expression during Sexual Fruiting Body Formation in Fusarium graminearum. MBio, 9(4). https://doi.org/10.1128/mbio.01292-18

Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel

Frontiers in Cellular and Infection Microbiology / Jun 19, 2018

Santos, L. A., Adhikarla, H., Yan, X., Wang, Z., Fouts, D. E., Vinetz, J. M., Alcantara, L. C. J., Hartskeerl, R. A., Goris, M. G. A., Picardeau, M., Reis, M. G., Townsend, J. P., Zhao, H., Ko, A. I., & Wunder, E. A. (2018). Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel. Frontiers in Cellular and Infection Microbiology, 8. https://doi.org/10.3389/fcimb.2018.00193

Lvr, a Signaling System That Controls Global Gene Regulation and Virulence in Pathogenic Leptospira

Frontiers in Cellular and Infection Microbiology / Feb 23, 2018

Adhikarla, H., Wunder, E. A., Mechaly, A. E., Mehta, S., Wang, Z., Santos, L., Bisht, V., Diggle, P., Murray, G., Adler, B., Lopez, F., Townsend, J. P., Groisman, E., Picardeau, M., Buschiazzo, A., & Ko, A. I. (2018). Lvr, a Signaling System That Controls Global Gene Regulation and Virulence in Pathogenic Leptospira. Frontiers in Cellular and Infection Microbiology, 8. https://doi.org/10.3389/fcimb.2018.00045

The Fast-Evolving phy-2 Gene Modulates Sexual Development in Response to Light in the Model Fungus Neurospora crassa

mBio / May 04, 2016

Wang, Z., Li, N., Li, J., Dunlap, J. C., Trail, F., & Townsend, J. P. (2016). The Fast-Evolving phy-2 Gene Modulates Sexual Development in Response to Light in the Model Fungus Neurospora crassa. MBio, 7(2). https://doi.org/10.1128/mbio.02148-15

Cellular Superspreaders: An Epidemiological Perspective on HIV Infection inside the Body

PLoS Pathogens / May 08, 2014

Talbert-Slagle, K., Atkins, K. E., Yan, K.-K., Khurana, E., Gerstein, M., Bradley, E. H., Berg, D., Galvani, A. P., & Townsend, J. P. (2014). Cellular Superspreaders: An Epidemiological Perspective on HIV Infection inside the Body. PLoS Pathogens, 10(5), e1004092. https://doi.org/10.1371/journal.ppat.1004092

Probabilistic uncertainty analysis of epidemiological modeling to guide public health intervention policy

Epidemics / Mar 01, 2014

Gilbert, J. A., Meyers, L. A., Galvani, A. P., & Townsend, J. P. (2014). Probabilistic uncertainty analysis of epidemiological modeling to guide public health intervention policy. Epidemics, 6, 37–45. https://doi.org/10.1016/j.epidem.2013.11.002

Global Gene Expression and Focused Knockout Analysis Reveals Genes Associated with Fungal Fruiting Body Development in Neurospora crassa

Eukaryotic Cell / Jan 01, 2014

Wang, Z., Lopez-Giraldez, F., Lehr, N., Farré, M., Common, R., Trail, F., & Townsend, J. P. (2014). Global Gene Expression and Focused Knockout Analysis Reveals Genes Associated with Fungal Fruiting Body Development in Neurospora crassa. Eukaryotic Cell, 13(1), 154–169. https://doi.org/10.1128/ec.00248-13

Detecting rare gene transfer events in bacterial populations

Frontiers in Microbiology / Jan 01, 2014

Nielsen, K. M., Bøhn, T., & Townsend, J. P. (2014). Detecting rare gene transfer events in bacterial populations. Frontiers in Microbiology, 4. https://doi.org/10.3389/fmicb.2013.00415

Yeast response to LA virus indicates coadapted global gene expression during mycoviral infection

FEMS Yeast Research / Jan 02, 2013

McBride, R. C., Boucher, N., Park, D. S., Turner, P. E., & Townsend, J. P. (2013). Yeast response to LA virus indicates coadapted global gene expression during mycoviral infection. FEMS Yeast Research, 13(2), 162–179. https://doi.org/10.1111/1567-1364.12019

Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology

Fungal Genetics and Biology / Aug 01, 2012

Sikhakolli, U. R., López-Giráldez, F., Li, N., Common, R., Townsend, J. P., & Trail, F. (2012). Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology. Fungal Genetics and Biology, 49(8), 663–673. https://doi.org/10.1016/j.fgb.2012.05.009

Sex-specific gene expression during asexual development of Neurospora crassa

Fungal Genetics and Biology / Jul 01, 2012

Wang, Z., Kin, K., López-Giráldez, F., Johannesson, H., & Townsend, J. P. (2012). Sex-specific gene expression during asexual development of Neurospora crassa. Fungal Genetics and Biology, 49(7), 533–543. https://doi.org/10.1016/j.fgb.2012.05.004

Differential impact of nutrition on developmental and metabolic gene expression during fruiting body development in Neurospora crassa

Fungal Genetics and Biology / May 01, 2012

Wang, Z., Lehr, N., Trail, F., & Townsend, J. P. (2012). Differential impact of nutrition on developmental and metabolic gene expression during fruiting body development in Neurospora crassa. Fungal Genetics and Biology, 49(5), 405–413. https://doi.org/10.1016/j.fgb.2012.03.004

Assessing the Probability of Detection of Horizontal Gene Transfer Events in Bacterial Populations

Frontiers in Microbiology / Jan 01, 2012

Townsend, J. P., Bøhn, T., & Nielsen, K. M. (2012). Assessing the Probability of Detection of Horizontal Gene Transfer Events in Bacterial Populations. Frontiers in Microbiology, 3. https://doi.org/10.3389/fmicb.2012.00027

SIR2 and other genes are abundantly expressed in long-lived natural segregants for replicative aging of the budding yeast Saccharomyces cerevisiae

FEMS Yeast Research / Mar 01, 2011

Guo, Z., Adomas, A. B., Jackson, E. D., Qin, H., & Townsend, J. P. (2011). SIR2 and other genes are abundantly expressed in long-lived natural segregants for replicative aging of the budding yeast Saccharomyces cerevisiae. FEMS Yeast Research, 11(4), 345–355. https://doi.org/10.1111/j.1567-1364.2011.00723.x

The filamentous fungal gene expression database (FFGED)

Fungal Genetics and Biology / Mar 01, 2010

Zhang, Z., & Townsend, J. P. (2010). The filamentous fungal gene expression database (FFGED). Fungal Genetics and Biology, 47(3), 199–204. https://doi.org/10.1016/j.fgb.2009.12.001

Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii

Fungal Genetics and Biology / Aug 01, 2006

Johannesson, H., Kasuga, T., Schaller, R. A., Good, B., Gardner, M. J., Townsend, J. P., Cole, G. T., & Taylor, J. W. (2006). Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology, 43(8), 545–559. https://doi.org/10.1016/j.fgb.2006.02.003

Population structure and gene evolution inSaccharomyces cerevisiae

FEMS Yeast Research / Aug 01, 2006

Aa, E., Townsend, J. P., Adams, R. I., Nielsen, K. M., & Taylor, J. W. (2006). Population structure and gene evolution inSaccharomyces cerevisiae. FEMS Yeast Research, 6(5), 702–715. https://doi.org/10.1111/j.1567-1364.2006.00059.x

Ariel Aptekmann

Bioinformatician at Hackensack Meridian Hospital Center for Discovery and Innovation
Most Relevant Research Interests
Microbiology
Microbiology
Other Research Interests (36)
Computational biology
bioinformatics
metagenomics
evolution
Multidisciplinary
And 31 more
About
I am a bioinformatician and researcher in computational biology. My research focuses on the application of machine learning and data analysis to understand the molecular basis of disease. I also work on developing novel software tools for data management and analysis.
Most Relevant Publications (2+)

24 total publications

Ecology theory disentangles microbial dichotomies

Environmental Microbiology / Sep 05, 2023

Couso, L. L., Soler‐Bistué, A., Aptekmann, A. A., & Sánchez, I. E. (2023). Ecology theory disentangles microbial dichotomies. Environmental Microbiology. Portico. https://doi.org/10.1111/1462-2920.16495

Ecology theory disentangles microbial dichotomies

Environmental Microbiology / Sep 05, 2023

Couso, L. L., Soler‐Bistué, A., Aptekmann, A. A., & Sánchez, I. E. (2023). Ecology theory disentangles microbial dichotomies. Environmental Microbiology. Portico. https://doi.org/10.1111/1462-2920.16495

Peter Reich

Director of the Institute for Global Change Biology (IGCB)
Most Relevant Research Interests
Microbiology
Other Research Interests (44)
Multidisciplinary
General Earth and Planetary Sciences
Ecology
Ecology, Evolution, Behavior and Systematics
General Environmental Science
And 39 more
About
Dr. Peter Reich, a renowned expert in forest ecology and climate change science, is the Director of the Institute for Global Change Biology (IGCB) at the University of Michigan. Reich, who has conducted global change research on plants, soils, and ecosystems across a range of scales, will maintain a joint affiliation at the University of Minnesota, where he is a Regents Professor. Previously, Reich was the Chief Scientist at the Hawkesbury Institute for the Environment at Western Sydney University in Australia from 2011 to 2021. He is a member of the National Academy of Sciences of the United States and the American Academy of Arts and Sciences, a fellow of the Ecological Society of America, and a BBVA Prize Laureate (BBVA Foundation Frontiers of Knowledge Award in Ecology and Conservation Biology). He also helped launch the science education channel, MinuteEarth, which has more than 400 million views on YouTube and other platforms. According to Research.com, Reich is the #1 scientist in the world in the field of ecology and evolution.
Most Relevant Publications (7+)

509 total publications

It is elemental: soil nutrient stoichiometry drives bacterial diversity

Environmental Microbiology / Feb 03, 2017

Delgado-Baquerizo, M., Reich, P. B., Khachane, A. N., Campbell, C. D., Thomas, N., Freitag, T. E., Abu Al-Soud, W., Sørensen, S., Bardgett, R. D., & Singh, B. K. (2017). It is elemental: soil nutrient stoichiometry drives bacterial diversity. Environmental Microbiology, 19(3), 1176–1188. Portico. https://doi.org/10.1111/1462-2920.13642

Metagenomic reconstruction of nitrogen cycling pathways in a CO2-enriched grassland ecosystem

Soil Biology and Biochemistry / Mar 01, 2017

Tu, Q., He, Z., Wu, L., Xue, K., Xie, G., Chain, P., Reich, P. B., Hobbie, S. E., & Zhou, J. (2017). Metagenomic reconstruction of nitrogen cycling pathways in a CO2-enriched grassland ecosystem. Soil Biology and Biochemistry, 106, 99–108. https://doi.org/10.1016/j.soilbio.2016.12.017

Light, earthworms, and soil resources as predictors of diversity of 10 soil invertebrate groups across monocultures of 14 tree species

Soil Biology and Biochemistry / Jan 01, 2016

Mueller, K. E., Eisenhauer, N., Reich, P. B., Hobbie, S. E., Chadwick, O. A., Chorover, J., Dobies, T., Hale, C. M., Jagodziński, A. M., Kałucka, I., Kasprowicz, M., Kieliszewska-Rokicka, B., Modrzyński, J., Rożen, A., Skorupski, M., Sobczyk, Ł., Stasińska, M., Trocha, L. K., Weiner, J., … Oleksyn, J. (2016). Light, earthworms, and soil resources as predictors of diversity of 10 soil invertebrate groups across monocultures of 14 tree species. Soil Biology and Biochemistry, 92, 184–198. https://doi.org/10.1016/j.soilbio.2015.10.010

Elevated CO2 influences microbial carbon and nitrogen cycling

BMC Microbiology / Jan 01, 2013

Xu, M., He, Z., Deng, Y., Wu, L., van Nostrand, J. D., Hobbie, S. E., Reich, P. B., & Zhou, J. (2013). Elevated CO2 influences microbial carbon and nitrogen cycling. BMC Microbiology, 13(1), 124. https://doi.org/10.1186/1471-2180-13-124

What controls the concentration of various aliphatic lipids in soil?

Soil Biology and Biochemistry / Aug 01, 2013

Mueller, K. E., Eissenstat, D. M., Müller, C. W., Oleksyn, J., Reich, P. B., & Freeman, K. H. (2013). What controls the concentration of various aliphatic lipids in soil? Soil Biology and Biochemistry, 63, 14–17. https://doi.org/10.1016/j.soilbio.2013.03.021

Above- and below-ground plant inputs both fuel soil food webs

Soil Biology and Biochemistry / Feb 01, 2012

Eisenhauer, N., & Reich, P. B. (2012). Above- and below-ground plant inputs both fuel soil food webs. Soil Biology and Biochemistry, 45, 156–160. https://doi.org/10.1016/j.soilbio.2011.10.019

The phylogenetic composition and structure of soil microbial communities shifts in response to elevated carbon dioxide

The ISME Journal / Jul 28, 2011

He, Z., Piceno, Y., Deng, Y., Xu, M., Lu, Z., DeSantis, T., Andersen, G., Hobbie, S. E., Reich, P. B., & Zhou, J. (2011). The phylogenetic composition and structure of soil microbial communities shifts in response to elevated carbon dioxide. The ISME Journal, 6(2), 259–272. https://doi.org/10.1038/ismej.2011.99

Raymond Weil

Professor of Soil Science at the University of Maryland
Most Relevant Research Interests
Microbiology
Other Research Interests (41)
soil science
agriculture
agronomy
fertilizers
soil fertility
And 36 more
Most Relevant Publications (3+)

66 total publications

Microwave irradiation of soil for routine measurement of microbial biomass carbon

Biology and Fertility of Soils / Sep 18, 1998

Islam, K. R., & Weil, R. R. (1998). Microwave irradiation of soil for routine measurement of microbial biomass carbon. Biology and Fertility of Soils, 27(4), 408–416. https://doi.org/10.1007/s003740050451

Freeze-dried soil extraction method for the measurement of microbial biomass C

Biology and Fertility of Soils / Feb 17, 1997

Islam, K. R., Weil, R. R., Mulchi, C. L., & Glenn, S. D. (1997). Freeze-dried soil extraction method for the measurement of microbial biomass C. Biology and Fertility of Soils, 24(2), 205–210. https://doi.org/10.1007/s003740050232

Effects of manuring on the arthropod community in an arable soil

Soil Biology and Biochemistry / Jan 01, 1979

Weil, R. R., & Kroontje, W. (1979). Effects of manuring on the arthropod community in an arable soil. Soil Biology and Biochemistry, 11(6), 669–679. https://doi.org/10.1016/0038-0717(79)90037-3

Gianfranco Santovito

Associate Professor of Physiology at the University of Padova
Most Relevant Research Interests
Microbiology
Other Research Interests (75)
Fisiologia degli organismi acquatici
Genetics
General Medicine
Molecular Biology
General Medicine
And 70 more
Most Relevant Publications (5+)

149 total publications

Metal Interaction and Regulation of Metallothionein Genes

Protist / Sep 01, 2002

BOLDRIN, F. (2002). Metal Interaction and Regulation of Metallothionein Genes. Protist, 153(3), 283–291. https://doi.org/10.1078/1434-4610-00105

Cu,Zn Superoxide Dismutases from Tetrahymena thermophila: Molecular Evolution and Gene Expression of the First Line of Antioxidant Defenses

Protist / Feb 01, 2015

Ferro, D., Bakiu, R., De Pittà, C., Boldrin, F., Cattalini, F., Pucciarelli, S., Miceli, C., & Santovito, G. (2015). Cu,Zn Superoxide Dismutases from Tetrahymena thermophila: Molecular Evolution and Gene Expression of the First Line of Antioxidant Defenses. Protist, 166(1), 131–145. https://doi.org/10.1016/j.protis.2014.12.003

Metallothionein Gene from Tetrahymena thermophila with a Copper-Inducible-Repressible Promoter

Eukaryotic Cell / Feb 01, 2006

Boldrin, F., Santovito, G., Gaertig, J., Wloga, D., Cassidy-Hanley, D., Clark, T. G., & Piccinni, E. (2006). Metallothionein Gene from Tetrahymena thermophila with a Copper-Inducible-Repressible Promoter. Eukaryotic Cell, 5(2), 422–425. https://doi.org/10.1128/ec.5.2.422-425.2006

Cloning and Sequencing of Four New Metallothionein Genes from Tetrahymena thermophila and T. pigmentosa: Evolutionary Relationships in Tetrahymena MT Family

Protist / Oct 01, 2003

Boldrin, F., Santovito, G., Negrisolo, E., & Piccinni, E. (2003). Cloning and Sequencing of Four New Metallothionein Genes from Tetrahymena thermophila and T. pigmentosa: Evolutionary Relationships in Tetrahymena MT Family. Protist, 154(3–4), 431–442. https://doi.org/10.1078/143446103322454167

Regulation of metallothionein (MT) in Tetrahymena: Induction of MT-mRNA and protein by cadmium exposure

European Journal of Protistology / Dec 01, 2000

Santovito, G., Irato, P., & Piccinni, E. (2000). Regulation of metallothionein (MT) in Tetrahymena: Induction of MT-mRNA and protein by cadmium exposure. European Journal of Protistology, 36(4), 437–442. https://doi.org/10.1016/s0932-4739(00)80049-8

Matheus Ferraz

PhD in computational chemistry, bioinformatician with experience in industry
Most Relevant Research Interests
Microbiology
Other Research Interests (35)
Computational Chemistry
Protein Design
Machine Learning
Virology
Infectious Diseases
And 30 more
Most Relevant Publications (1+)

17 total publications

The ongoing evolution of variants of concern and interest of SARS-CoV-2 in Brazil revealed by convergent indels in the amino (N)-terminal domain of the spike protein

Virus Evolution / Aug 14, 2021

Resende, P. C., Naveca, F. G., Lins, R. D., Dezordi, F. Z., Ferraz, M. V. F., Moreira, E. G., Coêlho, D. F., Motta, F. C., Paixão, A. C. D., Appolinario, L., Lopes, R. S., Mendonça, A. C. da F., da Rocha, A. S. B., Nascimento, V., Souza, V., Silva, G., Nascimento, F., Neto, L. G. L., da Silva, F. V., … Wallau, G. L. (2021). The ongoing evolution of variants of concern and interest of SARS-CoV-2 in Brazil revealed by convergent indels in the amino (N)-terminal domain of the spike protein. Virus Evolution, 7(2). https://doi.org/10.1093/ve/veab069

Patrick G. Grant, Ph.D.

California
Multi Discipline Experience with Multiple Open Inovation Solutions
Most Relevant Research Interests
Microbiology
Other Research Interests (42)
Multidisciplinary
General Agricultural and Biological Sciences
General Chemistry
Toxicology
Mechanical Engineering
And 37 more
Most Relevant Publications (2+)

41 total publications

An in vitro study of theaflavins extracted from black tea to neutralize bovine rotavirus and bovine coronavirus infections

Veterinary Microbiology / Oct 01, 1998

Clark, K. J., Grant, P. G., Sarr, A. B., Belakere, J. R., Swaggerty, C. L., Phillips, T. D., & Woode, G. N. (1998). An in vitro study of theaflavins extracted from black tea to neutralize bovine rotavirus and bovine coronavirus infections. Veterinary Microbiology, 63(2–4), 147–157. https://doi.org/10.1016/s0378-1135(98)00242-9

In vitro studies on the use of clay, clay minerals and charcoal to adsorb bovine rotavirus and bovine coronavirus

Veterinary Microbiology / Oct 01, 1998

Clark, K. J., Sarr, A. B., Grant, P. G., Phillips, T. D., & Woode, G. N. (1998). In vitro studies on the use of clay, clay minerals and charcoal to adsorb bovine rotavirus and bovine coronavirus. Veterinary Microbiology, 63(2–4), 137–146. https://doi.org/10.1016/s0378-1135(98)00241-7

Niko Popitsch

Senior Bioinformatician, University of Vienna
Most Relevant Research Interests
Microbiology
Other Research Interests (14)
Bioinformatics
Genetics (clinical)
General Physics and Astronomy
General Biochemistry, Genetics and Molecular Biology
General Chemistry
And 9 more
Most Relevant Publications (1+)

73 total publications

The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation

PLOS Pathogens / Sep 15, 2015

Drecktrah, D., Lybecker, M., Popitsch, N., Rescheneder, P., Hall, L. S., & Samuels, D. S. (2015). The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation. PLOS Pathogens, 11(9), e1005160. https://doi.org/10.1371/journal.ppat.1005160

John Joe

Faculty of Health and Medical Sciences, University of Surrey, Guildford, UK
Most Relevant Research Interests
microbiology
Microbiology
Other Research Interests (72)
systems biology
genetics
quantum biology
Genetics
Management of Technology and Innovation
And 67 more
Most Relevant Publications (31+)

95 total publications

IS901, a new member of a widespread class of atypical insertion sequences, is associated with pathogenicity inMycobacterium avium

Molecular Microbiology / Sep 01, 1991

Kunze, Z. M., Wall, S., Appelberg, R., Silva, M. T., Portaels, F., & McFadden, J. J. (1991). IS901, a new member of a widespread class of atypical insertion sequences, is associated with pathogenicity inMycobacterium avium. Molecular Microbiology, 5(9), 2265–2272. https://doi.org/10.1111/j.1365-2958.1991.tb02157.x

Carbon flux rerouting during Mycobacterium tuberculosis growth arrest

Molecular Microbiology / Oct 06, 2010

Shi, L., Sohaskey, C. D., Pfeiffer, C., Datta, P., Parks, M., McFadden, J., North, R. J., & Gennaro, M. L. (2010). Carbon flux rerouting during Mycobacterium tuberculosis growth arrest. Molecular Microbiology, 78(5), 1199–1215. https://doi.org/10.1111/j.1365-2958.2010.07399.x

The use of DNA probes identifying restriction-fragment-length polymorphisms to examine the Mycobacterium avium complex

Molecular Microbiology / Jul 01, 1987

McFadden, J. J., Butcher, P. D., Thompson, J., Chiodini, R., & Hermon-Taylor, J. (1987). The use of DNA probes identifying restriction-fragment-length polymorphisms to examine the Mycobacterium avium complex. Molecular Microbiology, 1(1), 283–291. https://doi.org/10.1111/j.1365-2958.1987.tb01934.x

13C Metabolic Flux Analysis Identifies an Unusual Route for Pyruvate Dissimilation in Mycobacteria which Requires Isocitrate Lyase and Carbon Dioxide Fixation

PLoS Pathogens / Jul 21, 2011

Beste, D. J. V., Bonde, B., Hawkins, N., Ward, J. L., Beale, M. H., Noack, S., Nöh, K., Kruger, N. J., Ratcliffe, R. G., & McFadden, J. (2011). 13C Metabolic Flux Analysis Identifies an Unusual Route for Pyruvate Dissimilation in Mycobacteria which Requires Isocitrate Lyase and Carbon Dioxide Fixation. PLoS Pathogens, 7(7), e1002091. https://doi.org/10.1371/journal.ppat.1002091

Mycobacterium tuberculosis strains disrupted in mce3 and mce4 operons are attenuated in mice

Journal of Medical Microbiology / Feb 01, 2008

Senaratne, R. H., Sidders, B., Sequeira, P., Saunders, G., Dunphy, K., Marjanovic, O., Reader, J. R., Lima, P., Chan, S., Kendall, S., McFadden, J., & Riley, L. W. (2008). Mycobacterium tuberculosis strains disrupted in mce3 and mce4 operons are attenuated in mice. Journal of Medical Microbiology, 57(2), 164–170. https://doi.org/10.1099/jmm.0.47454-0

Activity of mycobacterial promoters during intracellular and extracellular growth

Microbiology / Aug 01, 1995

Dellagostin, O. A., Esposito, G., Eales, L.-J., Dale, J. W., & McFadden, J. (1995). Activity of mycobacterial promoters during intracellular and extracellular growth. Microbiology, 141(8), 1785–1792. https://doi.org/10.1099/13500872-141-8-1785

Recombination in mycobacteria

Molecular Microbiology / Jul 01, 1996

McFadden, J. (1996). Recombination in mycobacteria. Molecular Microbiology, 21(2), 205–211. Portico. https://doi.org/10.1046/j.1365-2958.1996.6271345.x

Determination of Genome Size and DNA Homology between an Unclassified Mycobacterium Species Isolated from Patients with Crohn's Disease and Other Mycobacteria

Microbiology / Jan 01, 1987

McFadden, J. J., Butcher, P. D., Chiodini, R. J., & Hermon-Taylor, J. (1987). Determination of Genome Size and DNA Homology between an Unclassified Mycobacterium Species Isolated from Patients with Crohn’s Disease and Other Mycobacteria. Microbiology, 133(1), 211–214. https://doi.org/10.1099/00221287-133-1-211

Compiling a Molecular Inventory for Mycobacterium bovis BCG at Two Growth Rates: Evidence for Growth Rate-Mediated Regulation of Ribosome Biosynthesis and Lipid Metabolism

Journal of Bacteriology / Mar 01, 2005

Beste, D. J. V., Peters, J., Hooper, T., Avignone-Rossa, C., Bushell, M. E., & McFadden, J. (2005). Compiling a Molecular Inventory for Mycobacterium bovis BCG at Two Growth Rates: Evidence for Growth Rate-Mediated Regulation of Ribosome Biosynthesis and Lipid Metabolism. Journal of Bacteriology, 187(5), 1677–1684. https://doi.org/10.1128/jb.187.5.1677-1684.2005

Simple enzymic method for isolation of DNA from diverse bacteria

Journal of Microbiological Methods / Sep 01, 1989

Visuvanathan, S., Moss, M. T., Stanford, J. L., Hermon-Taylor, J., & McFadden, J. J. (1989). Simple enzymic method for isolation of DNA from diverse bacteria. Journal of Microbiological Methods, 10(2), 59–64. https://doi.org/10.1016/0167-7012(89)90001-8

Identification of proteins from tuberculin purified protein derivative (PPD) by LC-MS/MS

Tuberculosis / Nov 01, 2009

Borsuk, S., Newcombe, J., Mendum, T. A., Dellagostin, O. A., & McFadden, J. (2009). Identification of proteins from tuberculin purified protein derivative (PPD) by LC-MS/MS. Tuberculosis, 89(6), 423–430. https://doi.org/10.1016/j.tube.2009.07.003

Gene replacement by homologous recombination in Mycobacterium bovis BCG

Molecular Microbiology / May 01, 1995

Norman, E., Dellagostin, O. A., McFadden, J., & Dale, J. W. (1995). Gene replacement by homologous recombination in Mycobacterium bovis BCG. Molecular Microbiology, 16(4), 755–760. https://doi.org/10.1111/j.1365-2958.1995.tb02436.x

Recombinant Mycobacterium bovis BCG Expressing the Sm14 Antigen of Schistosoma mansoni Protects Mice from Cercarial Challenge

Infection and Immunity / Jun 01, 2004

Varaldo, P. B., Leite, L. C. C., Dias, W. O., Miyaji, E. N., Torres, F. I. G., Gebara, V. C., Armôa, G. R. G., Campos, A. S., Matos, D. C. S., Winter, N., Gicquel, B., Vilar, M. M., McFadden, J., Almeida, M. S., Tendler, M., & McIntosh, D. (2004). Recombinant Mycobacterium bovis BCG Expressing the Sm14 Antigen of Schistosoma mansoni Protects Mice from Cercarial Challenge. Infection and Immunity, 72(6), 3336–3343. https://doi.org/10.1128/iai.72.6.3336-3343.2004

Generation and characterization of a PhoP homologue mutant of Neisseria meningitidis

Molecular Microbiology / Feb 24, 2004

Johnson, C. R., Newcombe, J., Thorne, S., Borde, H. A., Eales-Reynolds, L.-J., Gorringe, A. R., Funnell, S. G. P., & McFadden, J. J. (2004). Generation and characterization of a PhoP homologue mutant of Neisseria meningitidis. Molecular Microbiology, 39(5), 1345–1355. https://doi.org/10.1111/j.1365-2958.2001.02324.x

The Acute-Phase Reactant C-Reactive Protein Binds to Phosphorylcholine-Expressing Neisseria meningitidis and Increases Uptake by Human Phagocytes

Infection and Immunity / Mar 01, 2008

Casey, R., Newcombe, J., McFadden, J., & Bodman-Smith, K. B. (2008). The Acute-Phase Reactant C-Reactive Protein Binds to Phosphorylcholine-Expressing Neisseria meningitidis and Increases Uptake by Human Phagocytes. Infection and Immunity, 76(3), 1298–1304. https://doi.org/10.1128/iai.00741-07

Transcriptomic Analysis Identifies Growth Rate Modulation as a Component of the Adaptation of Mycobacteria to Survival inside the Macrophage

Journal of Bacteriology / Jun 01, 2007

Beste, D. J. V., Laing, E., Bonde, B., Avignone-Rossa, C., Bushell, M. E., & McFadden, J. J. (2007). Transcriptomic Analysis Identifies Growth Rate Modulation as a Component of the Adaptation of Mycobacteria to Survival inside the Macrophage. Journal of Bacteriology, 189(11), 3969–3976. https://doi.org/10.1128/jb.01787-06

Construction and use of integrative vectors to express foreign genes in mycobacteria

Molecular Microbiology / Dec 01, 1993

Dellagostin, O. A., Wall, S., Norman, E., O’Shaughnessy, T., Dale, J. W., & McFadden, J. (1993). Construction and use of integrative vectors to express foreign genes in mycobacteria. Molecular Microbiology, 10(5), 983–993. https://doi.org/10.1111/j.1365-2958.1993.tb00970.x

IS900-promoted stable integration of a foreign gene into mycobacteria

Molecular Microbiology / Aug 01, 1991

England, P. M., Wall, S., & McFadden, J. (1991). IS900-promoted stable integration of a foreign gene into mycobacteria. Molecular Microbiology, 5(8), 2047–2052. https://doi.org/10.1111/j.1365-2958.1991.tb00827.x

Infection with an Avirulent phoP Mutant of Neisseria meningitidis Confers Broad Cross-Reactive Immunity

Infection and Immunity / Jan 01, 2004

Newcombe, J., Eales-Reynolds, L.-J., Wootton, L., Gorringe, A. R., Funnell, S. G. P., Taylor, S. C., & McFadden, J. J. (2004). Infection with an Avirulent phoP Mutant of Neisseria meningitidis Confers Broad Cross-Reactive Immunity. Infection and Immunity, 72(1), 338–344. https://doi.org/10.1128/iai.72.1.338-344.2004

Auxotrophic complementation as a selectable marker for stable expression of foreign antigens in Mycobacterium bovis BCG

Tuberculosis / Nov 01, 2007

Borsuk, S., Mendum, T. A., Fagundes, M. Q., Michelon, M., Cunha, C. W., McFadden, J., & Dellagostin, O. A. (2007). Auxotrophic complementation as a selectable marker for stable expression of foreign antigens in Mycobacterium bovis BCG. Tuberculosis, 87(6), 474–480. https://doi.org/10.1016/j.tube.2007.07.006

Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis

Molecular Microbiology / Jun 01, 1992

Knight, A. I., Ni, H., Cartwright, K. A. V., & McFadden, J. J. (1992). Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis. Molecular Microbiology, 6(11), 1565–1573. https://doi.org/10.1111/j.1365-2958.1992.tb00878.x

Context-sensitive transposition of IS6110 in mycobacteria

Microbiology / Nov 01, 1999

Wall, S., Ghanekar, K., McFadden, J., & Dale, J. W. (1999). Context-sensitive transposition of IS6110 in mycobacteria. Microbiology, 145(11), 3169–3176. https://doi.org/10.1099/00221287-145-11-3169

Stimulation of transposition of the Mycobacterium tuberculosis insertion sequence IS6110 by exposure to a microaerobic environment

Molecular Microbiology / Sep 01, 1999

Ghanekar, K., McBride, A., Dellagostin, O., Thorne, S., Mooney, R., & McFadden, J. (1999). Stimulation of transposition of the Mycobacterium tuberculosis insertion sequence IS6110 by exposure to a microaerobic environment. Molecular Microbiology, 33(5), 982–993. https://doi.org/10.1046/j.1365-2958.1999.01539.x

A microfluidic system for long-term time-lapse microscopy studies of mycobacteria

Tuberculosis / Nov 01, 2012

Golchin, S. A., Stratford, J., Curry, R. J., & McFadden, J. (2012). A microfluidic system for long-term time-lapse microscopy studies of mycobacteria. Tuberculosis, 92(6), 489–496. https://doi.org/10.1016/j.tube.2012.06.006

Naturally occurring insertional inactivation of theporAgene ofNeisseria meningitidisby integration of IS1301

Molecular Microbiology / Oct 01, 1998

Newcombe, J., Cartwright, K., Dyer, S., & McFadden, J. (1998). Naturally occurring insertional inactivation of theporAgene ofNeisseria meningitidisby integration of IS1301. Molecular Microbiology, 30(2), 453–454. https://doi.org/10.1046/j.1365-2958.1998.01056.x

Phenotypic and Transcriptional Characterization of the Meningococcal PhoPQ System, a Magnesium-Sensing Two-Component Regulatory System That Controls Genes Involved in Remodeling the Meningococcal Cell Surface

Journal of Bacteriology / Jul 01, 2005

Newcombe, J., Jeynes, J. C., Mendoza, E., Hinds, J., Marsden, G. L., Stabler, R. A., Marti, M., & McFadden, J. J. (2005). Phenotypic and Transcriptional Characterization of the Meningococcal PhoPQ System, a Magnesium-Sensing Two-Component Regulatory System That Controls Genes Involved in Remodeling the Meningococcal Cell Surface. Journal of Bacteriology, 187(14), 4967–4975. https://doi.org/10.1128/jb.187.14.4967-4975.2005

Comparative evaluation of Mycobacterium vaccae as a surrogate cloning host for use in the study of mycobacterial genetics

Microbiology / Jul 01, 2002

Medeiros, M. A., Dellagostin, O. A., Armôa, G. R. G., Degrave, W. M., de Mendonça-Lima, L., Lopes, M. Q., Costa, J. F., Mcfadden, J., & McIntosh, D. (2002). Comparative evaluation of Mycobacterium vaccae as a surrogate cloning host for use in the study of mycobacterial genetics. Microbiology, 148(7), 1999–2009. https://doi.org/10.1099/00221287-148-7-1999

Epidemiological and genetic markers, virulence factors and intracellular growth of Mycobacterium avium in AIDS

Research in Microbiology / Jan 01, 1992

McFadden, J. J., Kunze, Z. M., Portaels, F., Labrousse, V., & Rastogi, N. (1992). Epidemiological and genetic markers, virulence factors and intracellular growth of Mycobacterium avium in AIDS. Research in Microbiology, 143(4), 423–430. https://doi.org/10.1016/0923-2508(92)90057-u

No evidence for antibodies to mycobacterial A60 antigen in Crohn's disease sera by enzyme-linked immunoabsorbent assay (ELISA)

Journal of Medical Microbiology / Apr 01, 1988

Mcfadden, J. J., & Houdayer, C. (1988). No evidence for antibodies to mycobacterial A60 antigen in Crohn’s disease sera by enzyme-linked immunoabsorbent assay (ELISA). Journal of Medical Microbiology, 25(4), 295–298. https://doi.org/10.1099/00222615-25-4-295

Mycobacteria as possible causes of sarcoidosis and Crohn's disease

Journal of Applied Bacteriology / Dec 01, 1996

McFadden, J. J., & Fidler, H. M. (1996). Mycobacteria as possible causes of sarcoidosis and Crohn’s disease. Journal of Applied Bacteriology, 81, 47S-52S. https://doi.org/10.1111/j.1365-2672.1996.tb04598.x

Updating and curating metabolic pathways of TB

Tuberculosis / Jan 01, 2013

Slayden, R. A., Jackson, M., Zucker, J., Ramirez, M. V., Dawson, C. C., Crew, R., Sampson, N. S., Thomas, S. T., Jamshidi, N., Sisk, P., Caspi, R., Crick, D. C., McNeil, M. R., Pavelka, M. S., Niederweis, M., Siroy, A., Dona, V., McFadden, J., Boshoff, H., & Lew, J. M. (2013). Updating and curating metabolic pathways of TB. Tuberculosis, 93(1), 47–59. https://doi.org/10.1016/j.tube.2012.11.001

Example microbiology projects

How can companies collaborate more effectively with researchers, experts, and thought leaders to make progress on microbiology?

Development of Novel Antibiotics

A pharmaceutical company can collaborate with a Microbiology expert to develop new antibiotics to combat antibiotic-resistant bacteria. The researcher can contribute their knowledge of microbial mechanisms and drug discovery techniques to identify potential targets and develop effective treatments.

Food Safety Enhancement

A food production company can work with a Microbiology researcher to improve food safety measures. The researcher can conduct microbial analysis, develop protocols for contamination prevention, and provide guidance on proper handling and storage of food products.

Bioremediation Solutions

An environmental consulting firm can partner with a Microbiology expert to develop bioremediation solutions for contaminated sites. The researcher can identify and cultivate microbial species capable of degrading pollutants, leading to effective and sustainable remediation strategies.

Infectious Disease Surveillance

A healthcare organization can collaborate with a Microbiology expert to establish an infectious disease surveillance system. The researcher can provide expertise in pathogen detection, monitoring, and data analysis, enabling early detection and response to outbreaks.

Microbial Product Development

A biotechnology company can partner with a Microbiology researcher to develop microbial-based products. The researcher can contribute their knowledge of microbial metabolism and genetic engineering to optimize production processes and enhance product efficacy.